View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-17 (Length: 132)
Name: Solexa-NF5832-17
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-17 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30286384 - 30286515
Alignment:
| Q |
1 |
gaatttataaacacaatgtannnnnnnaataattataaacacaacatgkgaagtcatnnnnnnnnncacaatatcattcaatcaattgnnnnnnnnaagg |
100 |
Q |
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| T |
30286384 |
gaatttataaacacaatgtttttttttaataattataaacacaacatgtgaagtcataaaaaaaaacacaatatcattcaatcaattgttttttttaagg |
30286483 |
T |
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| Q |
101 |
gatcattcaatcaattgttaacaacataaata |
132 |
Q |
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| T |
30286484 |
gatcattcaatcaattgttaacaacataaata |
30286515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 30265776 - 30265672
Alignment:
| Q |
28 |
aataattataaacacaacatgkgaagtcatnnnnnnnnncacaatatcattcaatcaattgnnnnnnnnaagggatcattcaatcaattgttaacaacat |
127 |
Q |
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| T |
30265776 |
aataattataaacacaacatgtgaagtcataaaaaaaaacacaatatcattcaatcaattgttttttttaagggatcattcaatcaattgttaacaacat |
30265677 |
T |
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| Q |
128 |
aaata |
132 |
Q |
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||||| |
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| T |
30265676 |
aaata |
30265672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 30279519 - 30279623
Alignment:
| Q |
28 |
aataattataaacacaacatgkgaagtcatnnnnnnnnncacaatatcattcaatcaattgnnnnnnnnaagggatcattcaatcaattgttaacaacat |
127 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30279519 |
aataattataaacacaacatgtgaagtcataaaaaaaaacacaatatcattcaatcaattgttttttttaagggatcattcaatcaattgttaacaacat |
30279618 |
T |
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| Q |
128 |
aaata |
132 |
Q |
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||||| |
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| T |
30279619 |
aaata |
30279623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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