View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-19 (Length: 127)
Name: Solexa-NF5832-19
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-19 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 9e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 11729618 - 11729533
Alignment:
| Q |
42 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaac |
127 |
Q |
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| T |
11729618 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaac |
11729533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 23739930 - 23739845
Alignment:
| Q |
42 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaac |
127 |
Q |
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| T |
23739930 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaac |
23739845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 50834499 - 50834464
Alignment:
| Q |
8 |
cttacaaaccgagaaagcaaattcattccccaagtg |
43 |
Q |
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| T |
50834499 |
cttacaaaccgagaaagcaaattcattccccaagtg |
50834464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 50841354 - 50841389
Alignment:
| Q |
8 |
cttacaaaccgagaaagcaaattcattccccaagtg |
43 |
Q |
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| T |
50841354 |
cttacaaaccgagaaagcaaattcattccccaagtg |
50841389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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