View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-2 (Length: 205)

Name: Solexa-NF5832-2
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-2
Solexa-NF5832-2
[»] chr3 (26 HSPs)
chr3 (24-204)||(23290568-23290756)
chr3 (39-89)||(28576717-28576767)
chr3 (46-89)||(19730217-19730260)
chr3 (46-89)||(19750807-19750850)
chr3 (39-89)||(1502575-1502625)
chr3 (39-80)||(32166200-32166241)
chr3 (46-82)||(12704672-12704708)
chr3 (49-89)||(19323456-19323496)
chr3 (46-89)||(9210833-9210876)
chr3 (46-89)||(11093578-11093621)
chr3 (45-80)||(21110480-21110515)
chr3 (39-82)||(25074790-25074833)
chr3 (25-80)||(41319327-41319382)
chr3 (46-84)||(27858348-27858386)
chr3 (45-87)||(30367629-30367671)
chr3 (39-89)||(47542536-47542586)
chr3 (44-86)||(49636837-49636879)
chr3 (38-79)||(8903583-8903624)
chr3 (39-88)||(23623059-23623108)
chr3 (30-87)||(34409352-34409409)
chr3 (25-85)||(45289815-45289876)
chr3 (46-89)||(1921804-1921848)
chr3 (52-84)||(14338496-14338528)
chr3 (49-89)||(20141107-20141147)
chr3 (49-89)||(23272002-23272042)
chr3 (57-89)||(47678860-47678892)
[»] chr7 (24 HSPs)
chr7 (25-87)||(18750863-18750925)
chr7 (30-82)||(1934943-1934995)
chr7 (30-89)||(37775974-37776033)
chr7 (46-89)||(44172898-44172941)
chr7 (39-89)||(10893355-10893405)
chr7 (39-89)||(38134414-38134464)
chr7 (52-89)||(46550799-46550836)
chr7 (57-89)||(6824236-6824268)
chr7 (49-89)||(10893877-10893917)
chr7 (45-89)||(12667976-12668020)
chr7 (41-89)||(12843042-12843090)
chr7 (41-89)||(1745166-1745216)
chr7 (30-89)||(1885565-1885624)
chr7 (39-89)||(42720898-42720948)
chr7 (45-86)||(19679987-19680028)
chr7 (40-89)||(31808517-31808566)
chr7 (49-89)||(650530-650570)
chr7 (52-88)||(2143862-2143898)
chr7 (49-81)||(3119407-3119439)
chr7 (25-89)||(3749240-3749303)
chr7 (51-83)||(7241008-7241040)
chr7 (49-89)||(31837762-31837802)
chr7 (46-89)||(36013806-36013850)
chr7 (49-89)||(43160495-43160535)
[»] chr4 (35 HSPs)
chr4 (14-86)||(8457901-8457973)
chr4 (30-89)||(9988707-9988766)
chr4 (25-88)||(43093534-43093597)
chr4 (39-89)||(19262932-19262982)
chr4 (39-89)||(21732368-21732418)
chr4 (50-89)||(683064-683103)
chr4 (39-82)||(27096016-27096059)
chr4 (44-82)||(2976700-2976738)
chr4 (39-89)||(18513249-18513299)
chr4 (39-85)||(31965154-31965200)
chr4 (5-89)||(56049843-56049927)
chr4 (41-89)||(45615423-45615471)
chr4 (51-87)||(46632847-46632883)
chr4 (39-89)||(10435087-10435138)
chr4 (46-89)||(20119953-20119996)
chr4 (30-89)||(48433210-48433269)
chr4 (41-86)||(1336654-1336702)
chr4 (39-85)||(10164464-10164510)
chr4 (39-89)||(14465302-14465352)
chr4 (42-80)||(41989568-41989606)
chr4 (52-89)||(5075366-5075403)
chr4 (45-89)||(6844653-6844695)
chr4 (25-82)||(7424657-7424714)
chr4 (46-87)||(15969361-15969402)
chr4 (40-85)||(31277036-31277081)
chr4 (24-89)||(33950122-33950187)
chr4 (25-82)||(34589721-34589778)
chr4 (46-82)||(5654606-5654642)
chr4 (53-89)||(10164862-10164898)
chr4 (46-82)||(10546156-10546192)
chr4 (31-79)||(20012235-20012283)
chr4 (56-88)||(31901286-31901318)
chr4 (57-89)||(45267888-45267920)
chr4 (46-82)||(49345736-49345772)
chr4 (49-89)||(50875210-50875250)
[»] chr8 (19 HSPs)
chr8 (39-89)||(32691744-32691794)
chr8 (49-89)||(1586619-1586659)
chr8 (39-89)||(10002171-10002222)
chr8 (39-89)||(31548301-31548351)
chr8 (49-89)||(16994051-16994091)
chr8 (39-86)||(14480139-14480186)
chr8 (48-89)||(25161235-25161276)
chr8 (45-82)||(29198494-29198531)
chr8 (39-80)||(32056528-32056569)
chr8 (48-85)||(33049118-33049155)
chr8 (46-83)||(34863489-34863526)
chr8 (24-89)||(42874508-42874573)
chr8 (39-79)||(2517108-2517148)
chr8 (46-90)||(2723763-2723807)
chr8 (46-78)||(6211456-6211488)
chr8 (46-82)||(8017494-8017530)
chr8 (45-85)||(24362330-24362370)
chr8 (25-65)||(27587901-27587941)
chr8 (49-89)||(31681838-31681878)
[»] chr1 (36 HSPs)
chr1 (39-89)||(18556034-18556084)
chr1 (39-89)||(29230066-29230116)
chr1 (25-89)||(26462653-26462717)
chr1 (39-90)||(26777384-26777436)
chr1 (46-89)||(30847728-30847771)
chr1 (46-89)||(43609826-43609869)
chr1 (39-89)||(31667426-31667476)
chr1 (7-89)||(38078669-38078753)
chr1 (56-89)||(50195473-50195506)
chr1 (39-88)||(51191091-51191139)
chr1 (46-86)||(9656775-9656815)
chr1 (49-81)||(24701116-24701148)
chr1 (45-89)||(28524492-28524536)
chr1 (25-88)||(6557267-6557330)
chr1 (30-89)||(21057775-21057834)
chr1 (56-87)||(36041367-36041398)
chr1 (46-89)||(37203563-37203606)
chr1 (56-86)||(23621067-23621097)
chr1 (56-86)||(23652412-23652442)
chr1 (56-86)||(23737846-23737876)
chr1 (43-86)||(24999011-24999056)
chr1 (39-84)||(1118409-1118454)
chr1 (49-86)||(6617426-6617463)
chr1 (48-89)||(8203831-8203872)
chr1 (46-83)||(17080895-17080932)
chr1 (44-85)||(17166823-17166864)
chr1 (46-82)||(3921675-3921711)
chr1 (49-89)||(12611977-12612017)
chr1 (45-89)||(16164323-16164367)
chr1 (52-84)||(24462283-24462315)
chr1 (51-87)||(26307082-26307118)
chr1 (46-82)||(32340655-32340691)
chr1 (61-89)||(32637858-32637886)
chr1 (39-87)||(33202904-33202952)
chr1 (39-71)||(44296520-44296552)
chr1 (45-85)||(48317604-48317644)
[»] chr5 (23 HSPs)
chr5 (39-87)||(25875326-25875374)
chr5 (49-89)||(27253296-27253336)
chr5 (21-89)||(38749571-38749639)
chr5 (24-82)||(2039864-2039922)
chr5 (46-87)||(16881144-16881185)
chr5 (30-82)||(43208289-43208341)
chr5 (39-82)||(4344743-4344786)
chr5 (43-90)||(7512204-7512251)
chr5 (39-89)||(28296329-28296379)
chr5 (55-89)||(29200807-29200841)
chr5 (49-86)||(645343-645380)
chr5 (110-139)||(5053391-5053420)
chr5 (52-89)||(10010568-10010605)
chr5 (41-82)||(11596470-11596511)
chr5 (48-89)||(28322251-28322292)
chr5 (1-89)||(31084285-31084374)
chr5 (39-87)||(2577190-2577238)
chr5 (44-80)||(4192842-4192878)
chr5 (29-85)||(5223605-5223661)
chr5 (46-86)||(16199296-16199336)
chr5 (28-89)||(18542218-18542280)
chr5 (20-80)||(39342436-39342496)
chr5 (45-89)||(39828473-39828517)
[»] chr6 (20 HSPs)
chr6 (39-82)||(2493429-2493472)
chr6 (46-89)||(6284669-6284712)
chr6 (49-128)||(10157995-10158078)
chr6 (44-89)||(18803253-18803298)
chr6 (49-89)||(10335384-10335424)
chr6 (25-89)||(30866152-30866216)
chr6 (46-90)||(34547213-34547256)
chr6 (33-85)||(34625729-34625781)
chr6 (47-81)||(8148129-8148163)
chr6 (39-89)||(10842533-10842583)
chr6 (39-89)||(19343526-19343576)
chr6 (46-80)||(33076416-33076450)
chr6 (48-89)||(9024184-9024225)
chr6 (46-79)||(17168902-17168935)
chr6 (44-89)||(29449687-29449732)
chr6 (45-82)||(31805556-31805593)
chr6 (41-89)||(9617437-9617485)
chr6 (25-89)||(10760850-10760913)
chr6 (3-82)||(19602196-19602276)
chr6 (41-89)||(32577472-32577520)
[»] scaffold0019 (1 HSPs)
scaffold0019 (39-89)||(104448-104498)
[»] chr2 (15 HSPs)
chr2 (45-87)||(12933353-12933395)
chr2 (39-89)||(18570973-18571023)
chr2 (38-93)||(34687006-34687062)
chr2 (38-93)||(34709418-34709474)
chr2 (30-89)||(14268741-14268800)
chr2 (46-89)||(26787746-26787789)
chr2 (30-85)||(32843705-32843760)
chr2 (38-84)||(35888635-35888682)
chr2 (40-87)||(39017340-39017386)
chr2 (39-89)||(16630796-16630846)
chr2 (24-86)||(42043208-42043270)
chr2 (51-89)||(43065571-43065609)
chr2 (39-85)||(35379205-35379253)
chr2 (39-80)||(40681983-40682024)
chr2 (39-71)||(25317138-25317170)
[»] scaffold0050 (1 HSPs)
scaffold0050 (45-89)||(59132-59176)
[»] scaffold0024 (2 HSPs)
scaffold0024 (45-89)||(59099-59143)
scaffold0024 (30-89)||(21083-21141)
[»] scaffold0373 (1 HSPs)
scaffold0373 (45-89)||(1226-1268)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 23290568 - 23290756
Alignment:
Q  24 aacaccgacacatccacaccggtaataatttgaaa--aaatgacataattgaatgtaatcacatgtgtgccagacacctcacacaccatcgatcagaagt 121  Q
    ||||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||    
T  23290568 aacacggacacatcaacaacggtaataatttgaaataaaatgacataattgaatgtaatcacatatgtgtcagacaccgcacacaccatctatcagaagt 23290667  T
Q  122 gtaggtg-ctacagaggttaaatttggac-caaaatataatcaaatgt----taaaaacagtgatttttacacccagttggaaactttt 204  Q
    ||||||| ||||| |||||||||||||||  ||||||| |||||||||    ||||||||||| |||| ||||| ||||| ||||||||    
T  23290668 gtaggtgcctacataggttaaatttggactaaaaatatcatcaaatgttaaataaaaacagtggttttcacaccaagttgaaaactttt 23290756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 28576717 - 28576767
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  28576717 acaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 19730260 - 19730217
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  19730260 taataatttgagaaaatgacataattgaatgtgatcacatgtgt 19730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 19750850 - 19750807
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  19750850 taataatttgagaaaatgacataattgaatgtgatcacatgtgt 19750807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 1502575 - 1502625
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||||||||| | | ||||||||||||||||||||||||||||||||    
T  1502575 acactggtaataatctaagaaaatgacataattgaatgtaatcacatgtgt 1502625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 32166241 - 32166200
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  32166241 acactggtaataatttgagaaaatgacataattgaatgtaat 32166200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 12704708 - 12704672
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12704708 taataatttgaaaaaatgacataattcaatgtaatca 12704672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 19323496 - 19323456
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  19323496 taatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 9210876 - 9210833
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||    
T  9210876 taataatttgagaaaatgacataattcaatggaatcacatgtgt 9210833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 11093578 - 11093621
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||| || ||||||| ||||||    
T  11093578 taataatttgaaaaaatgacataattcaaagtaatcagatgtgt 11093621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 21110515 - 21110480
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||||||||||| |||||||||||||||||||||||    
T  21110515 gtaataatttgagaaaatgacataattgaatgtaat 21110480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 25074790 - 25074833
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||    
T  25074790 acaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 41319382 - 41319327
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||| ||||| || |||||  |||||||||||||||||||||||||| ||||||||    
T  41319382 acacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 27858348 - 27858386
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcaca 84  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  27858348 taataatttgagaaaatgacctaattgaatgtaatcaca 27858386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 30367671 - 30367629
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||||||| | ||||||||||||||||||||||||| ||||    
T  30367671 gtaataatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 47542536 - 47542586
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||||||||||||| |||||||  || ||||||||||||||||||||    
T  47542536 acactggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgt 47542586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 49636879 - 49636837
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    ||||||||||||| |||||||  ||||||||||||||||||||    
T  49636879 ggtaataatttgagaaaatgaattaattgaatgtaatcacatg 49636837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 8903583 - 8903624
Alignment:
Q  38 cacaccggtaataatttgaaaaaatgacataattgaatgtaa 79  Q
    |||||||||||| || ||| ||||||||||||||||||||||    
T  8903583 cacaccggtaattatctgagaaaatgacataattgaatgtaa 8903624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 23623108 - 23623059
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtg 88  Q
    |||||| ||||||||||||||||| || ||||||||||| ||||| ||||    
T  23623108 acaccgataataatttgaaaaaataacgtaattgaatgttatcacgtgtg 23623059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 34409409 - 34409352
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    ||||| || |||||| ||||| || || |||||||||||||| |||||||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcacatgt 34409352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 45289815 - 45289876
Alignment:
Q  25 acaccgacacatccacaccggtaataatttga-aaaaatgacataattgaatgtaatcacat 85  Q
    |||| |||||||| ||| |  ||||||||||| |||||||| ||||||||||||||||||||    
T  45289815 acacagacacatcgacaacaataataatttgagaaaaatgatataattgaatgtaatcacat 45289876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 1921804 - 1921848
Alignment:
Q  46 taataatttgaaaaaatg-acataattgaatgtaatcacatgtgt 89  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||    
T  1921804 taattatttgaaaaaattcacataattgaatgtaatcacatgtgt 1921848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 14338528 - 14338496
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcaca 84  Q
    |||||||||||||||||||| ||||||||||||    
T  14338528 tttgaaaaaatgacataattcaatgtaatcaca 14338496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 20141107 - 20141147
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  20141107 taatttgagaaactgacataattgaatgtaatcatatgtgt 20141147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 23272042 - 23272002
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  23272042 taatttgagaaactgacataattgaatgtaatcatatgtgt 23272002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 47678860 - 47678892
Alignment:
Q  57 aaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||| ||||||    
T  47678860 aaaaatgacataattgaatgtaatcatatgtgt 47678892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 18750863 - 18750925
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||| |||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  18750863 acactgacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 1934943 - 1934995
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||||||||||    
T  1934943 gacacatcgacaccgataataatttgtaaaattgacataattgaatgtaatca 1934995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 37775974 - 37776033
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||| ||||| ||| |||||||| |||||||||||||| |||||||||||||||||    
T  37775974 gacaaatcgacaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 44172941 - 44172898
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  44172941 taataatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 10893405 - 10893355
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||| | |||||||| |||||||||||||||||||||||| |||||||    
T  10893405 acaccggcagtaatttgagaaaatgacataattgaatgtaatcgcatgtgt 10893355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 38134464 - 38134414
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||| |||||||||||||| |||||||||| ||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 46550836 - 46550799
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||| |||||||||||||||    
T  46550836 tttgaaaaaatgacataattgagtgtaatcacatgtgt 46550799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 6824236 - 6824268
Alignment:
Q  57 aaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||||||||||    
T  6824236 aaaaatgacataattgaatgtaatcacatgtgt 6824268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 10893917 - 10893877
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  10893917 taatttaagaaaatgacataattgaatgtaatcacatgtgt 10893877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 12668020 - 12667976
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||    
T  12668020 gtaattatttgaaaaaatggtataattgaatgtaatcacatgtgt 12667976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 12843090 - 12843042
Alignment:
Q  41 accggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||| |||||||| |||||||||||||||||| |||||||| ||||    
T  12843090 accggtattaatttgagaaaatgacataattgaatataatcacacgtgt 12843042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 1745166 - 1745216
Alignment:
Q  41 accggtaataatttgaaaaaa--tgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||  || |||||||||||| ||||||||||||    
T  1745166 accggtaataatttgaaaaaaaatggcataattgaatggaatcacatgtgt 1745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 1885565 - 1885624
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| |||| | ||| | |||||||||||||||||||| |||||||||||| ||||    
T  1885565 gacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgt 1885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 42720948 - 42720898
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||||||||| |||||||| |||||||| | ||||||    
T  42720948 acaccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgt 42720898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 19679987 - 19680028
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  19679987 gtaataattttaaaaaataacataattgaatataatcacatg 19680028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 31808566 - 31808517
Alignment:
Q  40 caccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| ||||||||||| ||||||||| || | |||||||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgt 31808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 650530 - 650570
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  650530 taatttaagaaaatgacataattgaatgcaatcacatgtgt 650570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2143898 - 2143862
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcacatgtg 88  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  2143898 tttgagaaaatgacataattcaatgtaatcacatgtg 2143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 3119407 - 3119439
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatc 81  Q
    |||||||| ||||||||||||||||||||||||    
T  3119407 taatttgagaaaatgacataattgaatgtaatc 3119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3749240 - 3749303
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||||||||||||  | ||||||||| |||||||||||||||| |||| ||||| ||||||    
T  3749240 acacggacacatccacatagataataattt-aaaaaatgacataattcaatgcaatcagatgtgt 3749303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 7241040 - 7241008
Alignment:
Q  51 atttgaaaaaatgacataattgaatgtaatcac 83  Q
    ||||||||||||||||||||| |||||||||||    
T  7241040 atttgaaaaaatgacataattcaatgtaatcac 7241008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 31837762 - 31837802
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  31837762 taatttgagaaaatgaaataattgaatgtaatctcatgtgt 31837802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 36013850 - 36013806
Alignment:
Q  46 taataatttga-aaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||    
T  36013850 taataatttgagaaaaatgacataattcaatgtaatcacacgtgt 36013806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 43160495 - 43160535
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| | ||||| ||||||||||||||||||||||||||    
T  43160495 taatttaagaaaataacataattgaatgtaatcacatgtgt 43160535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 8457901 - 8457973
Alignment:
Q  14 acaccggaca-aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||| ||||| ||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  8457901 acaccggacacaacactgacacatct-cactggtaataatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 9988766 - 9988707
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| ||||||| |||| | |||||| ||||||||||||||||||||||||||||||||    
T  9988766 gacacgtccacacaggtagttatttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 43093597 - 43093534
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtg 88  Q
    |||| ||||| || |||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  43093597 acactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 19262982 - 19262932
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  19262982 acaccagtaataatttgagaagatgacataattgaatgtaatcacatgtgt 19262932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 21732418 - 21732368
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  21732418 acaccggtaggaatttgaaaaaatgacataattgattgtaatcacatgtgt 21732368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 683064 - 683103
Alignment:
Q  50 aatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 27096059 - 27096016
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  27096059 acaccgataataatttgacaaaatgacataattgaatgtaatca 27096016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 2976700 - 2976738
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  2976700 ggtaataatttgagaaaatgacataattgaatgtaatca 2976738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 18513299 - 18513249
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||| |||||||||||||| |||||||||| ||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 31965200 - 31965154
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  31965200 acaccagtaattatttgaaaaaatgacataattgaatgcaatcacat 31965154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 56049843 - 56049927
Alignment:
Q  5 cagacacgaacaccggacaa-acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||||||||||  |||| |||||||| |||||| |||||||||| | |||||||||| || |||||||||| ||||||    
T  56049843 cagacacggacaccggacacgacacggacacatcgacaccgataataatttg-agaaatgacatagttcaatgtaatcatatgtgt 56049927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 45615471 - 45615423
Alignment:
Q  41 accggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||| |||||| | ||||||||||||||||| ||||||||||||||    
T  45615471 accggtagtaatttaagaaaatgacataattgaacgtaatcacatgtgt 45615423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 46632883 - 46632847
Alignment:
Q  51 atttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||| ||||||||||||||||||||||||||||||    
T  46632883 atttgacaaaatgacataattgaatgtaatcacatgt 46632847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 10435138 - 10435087
Alignment:
Q  39 acaccggtaataatttgaaaaaa-tgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||| |||||| ||||| ||||||||||||||||||||||    
T  10435138 acaccggtagtaatttaaaaaaaatgacaaaattgaatgtaatcacatgtgt 10435087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 20119953 - 20119996
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||    
T  20119953 taataatttgagaaaatgaaataatttaatgtaatcacatgtgt 20119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 48433269 - 48433210
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| ||| |||| || | ||||||| ||||||||||||||||| ||||||||    
T  48433269 gacacatccactccgataattatcttaaaaaataacataattgaatgtaattacatgtgt 48433210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 1336702 - 1336654
Alignment:
Q  41 accggtaataatttg---aaaaaatgacataattgaatgtaatcacatg 86  Q
    ||||||||||||| |   |||||||||||||||||||||||||||||||    
T  1336702 accggtaataattcgaaaaaaaaatgacataattgaatgtaatcacatg 1336654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 10164464 - 10164510
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    ||||||||| |||||| | |||||| |||||||||||||||||||||    
T  10164464 acaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 14465352 - 14465302
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||| |||||||||||||| ||| |||||| ||||||    
T  14465352 acaccgataataatttgagaaaatgacataattcaatttaatcatatgtgt 14465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 41989568 - 41989606
Alignment:
Q  42 ccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  41989568 ccggtaataatttaagaaaatgacataattgaatgtaat 41989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 5075403 - 5075366
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  5075403 tttgaaagaatggcataattgaatgtaatcacatgtgt 5075366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 6844695 - 6844653
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||| |||||||||  |||||||||||||||||||||    
T  6844695 gtaataatttgagaaaatgaca--attgaatgtaatcacatgtgt 6844653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 7424657 - 7424714
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||||||||| |||||| ||||||||| | ||||| | |||||||| ||||||||    
T  7424657 acaccgacacatcaacaccgataataatttaagaaaataatataattgagtgtaatca 7424714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 15969361 - 15969402
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  15969361 taataattttaaaaaataacataatttaatgtaatcacatgt 15969402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 31277081 - 31277036
Alignment:
Q  40 caccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    ||||| ||||||||||| |||||||  |||||||||||||||||||    
T  31277081 caccgataataatttgagaaaatgaactaattgaatgtaatcacat 31277036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 33950122 - 33950187
Alignment:
Q  24 aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| ||||| || || ||| ||||||||||| ||||| |||||||| |||||||||| ||||||    
T  33950122 aacactgacacttcaacgccgctaataatttgagaaaatcacataatttaatgtaatcatatgtgt 33950187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 34589778 - 34589721
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||| |||||||  |||||| ||| ||||||| |||||||||||||| ||||||||||    
T  34589778 acacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 5654642 - 5654606
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  5654642 taataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 10164898 - 10164862
Alignment:
Q  53 ttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  10164898 ttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 10546156 - 10546192
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  10546156 taataatttgagaaaatgacataattcaatgtaatca 10546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 20012283 - 20012235
Alignment:
Q  31 acacatccacaccggtaataatttgaaaaaatgacataattgaatgtaa 79  Q
    ||||||| |||| ||||||||||||||||||  | ||||||||||||||    
T  20012283 acacatcaacactggtaataatttgaaaaaaaaatataattgaatgtaa 20012235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 31901318 - 31901286
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatgtg 88  Q
    |||||||| ||||||||||||||||||||||||    
T  31901318 aaaaaatggcataattgaatgtaatcacatgtg 31901286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 45267888 - 45267920
Alignment:
Q  57 aaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||| ||||||    
T  45267888 aaaaatgacataattgaatgtaatcatatgtgt 45267920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 49345736 - 49345772
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||| |||||||||||| |||||||||||||||||||    
T  49345736 taattatttgaaaaaataacataattgaatgtaatca 49345772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 50875250 - 50875210
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||||||||||| ||| |||||| ||||||    
T  50875250 taatttgaaaaaatgacataattcaatttaatcagatgtgt 50875210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 32691744 - 32691794
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  32691744 acaccggtagtaatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 1586619 - 1586659
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  1586619 taatttgaaaaaatgacataattgaacgtaatcacatgtgt 1586659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 10002222 - 10002171
Alignment:
Q  39 acaccggtaataatttgaaaaaa-tgacataattgaatgtaatcacatgtgt 89  Q
    |||||| |||||||||||||||| |||||||||| |||||||||||||||||    
T  10002222 acaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgt 10002171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 31548351 - 31548301
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| |||| |||||| |||||||||||||| |||||||||||||||||    
T  31548351 acaccgataattatttgataaaatgacataattcaatgtaatcacatgtgt 31548301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 16994051 - 16994091
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  16994051 taatttgagaaaatgacagaattgaatgtaatcacatgtgt 16994091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 14480139 - 14480186
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||| |||||||||| |||||||||| ||||||| |||||||||||    
T  14480139 acaccgataataatttggaaaaatgacaaaattgaaagtaatcacatg 14480186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 25161235 - 25161276
Alignment:
Q  48 ataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  25161235 ataatttgaaaaaatggtataattgaatgtcatcacatgtgt 25161276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 29198531 - 29198494
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  29198531 gtaataatttgagaaaatgacataattcaatgtaatca 29198494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 32056528 - 32056569
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  32056528 acaccgataataatttgaaagaatgacataattgaacgtaat 32056569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 33049155 - 33049118
Alignment:
Q  48 ataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  33049155 ataacttgaaaaaatgacataattgaatgtaattacat 33049118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 34863489 - 34863526
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcac 83  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  34863489 taattatttgaaaaaatgacttaattgaatgtaatcac 34863526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 42874508 - 42874573
Alignment:
Q  24 aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| ||||| || |||||| ||| | ||||| |||||||||||||| |||||||||||| ||||    
T  42874508 aacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 2517108 - 2517148
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaa 79  Q
    |||||||||||||||||| |||||||  |||||||||||||    
T  2517108 acaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 2723807 - 2723763
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgtg 90  Q
    |||||| |||| ||||| |||||||||||||||| ||||||||||    
T  2723807 taataacttgagaaaataacataattgaatgtaagcacatgtgtg 2723763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 6211488 - 6211456
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgta 78  Q
    |||||||||||||||||||||||||| ||||||    
T  6211488 taataatttgaaaaaatgacataattcaatgta 6211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 8017494 - 8017530
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  8017494 taataatatgaaaaaatgacataattgagtgtaatca 8017530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 24362330 - 24362370
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  24362330 gtaaaaatttgaaaaaatgaattaattgaatgtaatcacat 24362370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 27587901 - 27587941
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgac 65  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  27587901 acactgacacatcaacaccagtaataatttgaaaaaatgac 27587941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 31681878 - 31681838
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  31681878 taatttaagaaaatgacataattgaatgaaatcacatgtgt 31681838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 18556084 - 18556034
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  18556084 acaccggtaataatttaataaaatgacataattgactgtaatcacatgtgt 18556034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 29230066 - 29230116
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  29230066 acaccggtaataatttgagaaaatgacataattgaatgtaatatcatgtgt 29230116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 26462717 - 26462653
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||| || |||| | ||||||||| | ||||||| ||||||||||||||||||||||||    
T  26462717 acaccgacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 26777436 - 26777384
Alignment:
Q  39 acaccggtaataatttgaaaaaa-tgacataattgaatgtaatcacatgtgtg 90  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  26777436 acaccgataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtg 26777384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 30847771 - 30847728
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgt 30847728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 43609869 - 43609826
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgt 43609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 31667426 - 31667476
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  31667426 acactggtaataattttagaaaatgacataattaaatgtaatcacatgtgt 31667476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 38078753 - 38078669
Alignment:
Q  7 gacacgaacaccggaca--aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||  ||||| ||||| || |||| | ||||||||||||||||| |||||||| |||||||| ||| ||||    
T  38078753 gacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgt 38078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 50195506 - 50195473
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||||||||||||||||||||||    
T  50195506 aaaaaatgacataattgaatgtaatcacatgtgt 50195473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 51191091 - 51191139
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtg 88  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  51191091 acaccggtaactatttgaaaaaatgacataa-tgaatgtaatcacatgtg 51191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 9656815 - 9656775
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  9656815 taataatttgaaaaaatgatttaattgaatgtaatcacatg 9656775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 24701148 - 24701116
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatc 81  Q
    |||||||||||||||||||||||||||||||||    
T  24701148 taatttgaaaaaatgacataattgaatgtaatc 24701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 28524536 - 28524492
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||| || || ||||||||||||||||||    
T  28524536 gtaataatttgaaaaaatgaaatgatagaatgtaatcacatgtgt 28524492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 6557330 - 6557267
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtg 88  Q
    |||| ||| |||| |||| |||||| |||||| |||||||||||||||||||| || |||||||    
T  6557330 acactgactcatcgacactggtaattatttgagaaaatgacataattgaatgttatgacatgtg 6557267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 21057775 - 21057834
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| || |||||| ||||||||| | ||||| |||||||||||||||||| |||||||    
T  21057775 gacacgtcgacaccgctaataattttagaaaataacataattgaatgtaatcgcatgtgt 21057834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 36041367 - 36041398
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatgt 87  Q
    ||||||||||||||||||||||||||||||||    
T  36041367 aaaaaatgacataattgaatgtaatcacatgt 36041398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 37203563 - 37203606
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  37203563 taataatttgaaaaagtaaaataattgaatgtaatcacatgtgt 37203606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 23621097 - 23621067
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||||||||||||||||||||||||    
T  23621097 aaaaaatgacataattgaatgtaatcacatg 23621067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 23652442 - 23652412
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||||||||||||||||||||||||    
T  23652442 aaaaaatgacataattgaatgtaatcacatg 23652412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 23737876 - 23737846
Alignment:
Q  56 aaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||||||||||||||||||||||||    
T  23737876 aaaaaatgacataattgaatgtaatcacatg 23737846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 24999011 - 24999056
Alignment:
Q  43 cggtaataatttgaaaa--aatgacataattgaatgtaatcacatg 86  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||    
T  24999011 cggtaataatttaaaaagaaatgacataattgaatgtaatcacatg 24999056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 1118454 - 1118409
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcaca 84  Q
    |||| ||| |||||||||||||||||  ||||||||||||||||||    
T  1118454 acacgggtgataatttgaaaaaatgaattaattgaatgtaatcaca 1118409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 6617463 - 6617426
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  6617463 taatttgaaaaattgacataattgaatgtaatcgcatg 6617426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 8203831 - 8203872
Alignment:
Q  48 ataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||||||||| |||||||||||||| ||||    
T  8203831 ataatttgagaaaatgacataagtgaatgtaatcacaagtgt 8203872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 17080932 - 17080895
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcac 83  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  17080932 taataatttgagaaaataacataattgaatgtaatcac 17080895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 17166864 - 17166823
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||| |||||||| |||||||||||||||||||||| |||||    
T  17166864 ggtagtaatttgacaaaatgacataattgaatgtaaccacat 17166823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 3921675 - 3921711
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  3921675 taataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 12611977 - 12612017
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  12611977 taatttgaaaaaatcacataattgagtgtaatcatatgtgt 12612017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 16164367 - 16164323
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||| |||||||| |||||||| | ||||||    
T  16164367 gtaataatttgaaaaaatcacataatttaatgtaattatatgtgt 16164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 24462315 - 24462283
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcaca 84  Q
    |||||||||||||||||||| ||||||||||||    
T  24462315 tttgaaaaaatgacataattcaatgtaatcaca 24462283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 26307118 - 26307082
Alignment:
Q  51 atttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  26307118 atttgagaaaatgacataattgaatgaaatcacatgt 26307082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 32340691 - 32340655
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||||||||||||||||||||| |||| |||||    
T  32340691 taataatttgaaaaaatgacataatttaatgcaatca 32340655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 32637858 - 32637886
Alignment:
Q  61 atgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||||||||||||    
T  32637858 atgacataattgaatgtaatcacatgtgt 32637886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 33202904 - 33202952
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||| ||||||||| |||||||||||||| | |||||||||| ||||    
T  33202904 acaccgataataattttaaaaaatgacataaatcaatgtaatcatatgt 33202952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 44296552 - 44296520
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataatt 71  Q
    |||||||||||||||||| ||||||||||||||    
T  44296552 acaccggtaataatttgagaaaatgacataatt 44296520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 48317604 - 48317644
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  48317604 gtaataatttgagaaaatgaaataattgaatgtaataacat 48317644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25875326 - 25875374
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  25875326 acaccggtaatagtttgaaaaaaatacataattgaatgtaatcacatgt 25875374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 27253296 - 27253336
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  27253296 taatttgaaaaaatgtcataattgaatgtaatcacatgtgt 27253336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 38749639 - 38749571
Alignment:
Q  21 acaaacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||||  || |||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  38749639 acaaacacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 2039922 - 2039864
Alignment:
Q  24 aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    ||||| ||||| || |||||||||||||||||| |||||||||| ||| ||||||||||    
T  2039922 aacacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 16881144 - 16881185
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  16881144 taataatttgaaaaaatgacataatttaatgtaatcatatgt 16881185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 43208341 - 43208289
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||| |||||| || |||||||| |||||||||||||| ||||||||||    
T  43208341 gacacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 4344743 - 4344786
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||| |||||||||||||||||||||||||| | ||||||||    
T  4344743 acaccgataataatttgaaaaaatgacataattcagtgtaatca 4344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 7512204 - 7512251
Alignment:
Q  43 cggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgtg 90  Q
    ||||| |||||||| |||||||||| |||||||||||||| |||||||    
T  7512204 cggtagtaatttgagaaaatgacattattgaatgtaatcagatgtgtg 7512251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 28296329 - 28296379
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||| |||||||||||||| |||||| ||| ||||||    
T  28296329 acaccgataataatttgagaaaatgacataattcaatgtactcatatgtgt 28296379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 29200841 - 29200807
Alignment:
Q  55 gaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| |||||||||||||||||||||||||||||    
T  29200841 gaaaatatgacataattgaatgtaatcacatgtgt 29200807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 645343 - 645380
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    |||||| | |||||||||||||||||||||||||||||    
T  645343 taatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 5053391 - 5053420
Alignment:
Q  110 tcgatcagaagtgtaggtgctacagaggtt 139  Q
    ||||||||||||||||||||||||||||||    
T  5053391 tcgatcagaagtgtaggtgctacagaggtt 5053420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 10010568 - 10010605
Alignment:
Q  52 tttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||||||| | |||||||||||||||    
T  10010568 tttgaaaaaatgacataattcattgtaatcacatgtgt 10010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 11596511 - 11596470
Alignment:
Q  41 accggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  11596511 accgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 28322251 - 28322292
Alignment:
Q  48 ataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgt 28322292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31084285 - 31084374
Alignment:
Q  1 agcacagacacgaacaccggacaa-acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||| | ||||||||||  |||| |||||  | |||| | ||||||||||||||||| |||||||| |||||||| ||| ||||    
T  31084285 agcacagacatggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgt 31084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 2577238 - 2577190
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    |||||| ||||||||||| |||||||||||||| | |||||||| ||||    
T  2577238 acaccgataataatttgagaaaatgacataatttagtgtaatcatatgt 2577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 4192878 - 4192842
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  4192878 ggtaataatttgagaaaatggcataattgaatgtaat 4192842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 5223605 - 5223661
Alignment:
Q  29 cgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||||| ||||||| | |||| |||||||| ||| ||||||||||||| ||||||||    
T  5223605 cgacacgtccacactgataattatttgaaataattacataattgaatgcaatcacat 5223661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 16199336 - 16199296
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    ||||||||||| |||||||||||||| ||| ||||||||||    
T  16199336 taataatttgacaaaatgacataattcaatttaatcacatg 16199296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 18542280 - 18542218
Alignment:
Q  28 ccgacacatccacaccggtaataatttgaaaaaatgaca--taattgaatgtaatcacatgtgt 89  Q
    |||| ||||| ||||| |||||||||||| ||||| |||  |||||||||||||||||||||||    
T  18542280 ccgatacatcgacaccagtaataatttgagaaaat-acaagtaattgaatgtaatcacatgtgt 18542218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 39342436 - 39342496
Alignment:
Q  20 gacaaacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||| |||| ||||| || || ||| ||||||||||||||| |||||||||| ||||||||    
T  39342436 gacacacacagacacgtcaactccgataataatttgaaaaattgacataattcaatgtaat 39342496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 39828473 - 39828517
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||| || |||| |||||||||||||| |||||||||    
T  39828473 gtaataatttgagaatatgaaataattgaatgtaaccacatgtgt 39828517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 2493472 - 2493429
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  2493472 acaccgataataatttgacaaaatgacataattgaatgtaatca 2493429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 6284712 - 6284669
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  6284712 taataatttgagaaaatgacataattgaatttaatcacatgtgt 6284669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 10157995 - 10158078
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgtg----ccagacacctcacacaccatcgatcagaagtgtaggtg 128  Q
    |||||||| |||||||||||||| |||||||||||||||||     |||||||||  ||||||| | ||||| |||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggtaccagacaccgaacacacctttgatcaaaagtgtaggtg 10158078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 18803253 - 18803298
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||    
T  18803253 ggtaattatttgagaaaattacataattgaatgtaatcacatgtgt 18803298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 10335424 - 10335384
Alignment:
Q  49 taatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  10335424 taatttgagaaaatgacataattgaatgtaatcagatgtgt 10335384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30866216 - 30866152
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||| | |||||| ||||||||||| ||||| |||||||| |||||||| | ||||||    
T  30866216 acaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgt 30866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 34547256 - 34547213
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgtg 90  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  34547256 taataatttgaaaaa-tgacataatttaatgtaatcacatgtgtg 34547213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 34625729 - 34625781
Alignment:
Q  33 acatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    ||||| |||||| ||||||||||| |||||||  |||||||||||||||||||    
T  34625729 acatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 8148129 - 8148163
Alignment:
Q  47 aataatttgaaaaaatgacataattgaatgtaatc 81  Q
    |||||||||| ||||||||||||||||||||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaatc 8148163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 10842533 - 10842583
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||||||||| |||||||| | |||||||| ||||||    
T  10842533 acaccgctaataatttgaaaaaatcacataatttagtgtaatcatatgtgt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 19343576 - 19343526
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| || |||||||||||| |||||| ||| |||||||||||||||||    
T  19343576 acaccgatattaatttgaaaaagtgacatgattcaatgtaatcacatgtgt 19343526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 33076416 - 33076450
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaat 80  Q
    ||||||||||| |||||||||||||||||||||||    
T  33076416 taataatttgagaaaatgacataattgaatgtaat 33076450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 9024225 - 9024184
Alignment:
Q  48 ataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||||||||||| |||||||||| ||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgt 9024184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 17168902 - 17168935
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaa 79  Q
    |||||||||||||||||||||||||| |||||||    
T  17168902 taataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 29449687 - 29449732
Alignment:
Q  44 ggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| |||||| | ||||| ||||||||||||||||||||||||||    
T  29449687 ggtagtaatttcagaaaataacataattgaatgtaatcacatgtgt 29449732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 31805593 - 31805556
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  31805593 gtaataatatgataaaatgacataattgaatgtaatca 31805556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9617437 - 9617485
Alignment:
Q  41 accggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||||||| ||||| |||||||| |||||||| | ||||||    
T  9617437 accggtaataatttgagaaaatcacataattcaatgtaattatatgtgt 9617485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 10760913 - 10760850
Alignment:
Q  25 acaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||| ||||| || |||| | ||||||||||| |||||||||| |||||||||||||||| ||||    
T  10760913 acactgacacgtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgt 10760850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 19602276 - 19602196
Alignment:
Q  3 cacagacacgaacaccggaca-aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatca 82  Q
    |||||||| | |||||||||| ||||| |||||| | |||| | ||||||||||| ||||||| |||||| | ||||||||    
T  19602276 cacagacatggacaccggacacaacacggacacaccaacactgataataatttgagaaaatgatataattcagtgtaatca 19602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 32577520 - 32577472
Alignment:
Q  41 accggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| || |||||| |||||||  |||||||||||||||||||||||    
T  32577520 accggtgatgatttgagaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 104448 - 104498
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||| |||||||||||| ||||| ||||||||||||| ||||||||    
T  104448 acaccggtagtaatttgaaaaagtgacagaattgaatgtaataacatgtgt 104498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 12933395 - 12933353
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  12933395 gtaataatttgtaaaaatggcataattgaatgtaatcacatgt 12933353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 18570973 - 18571023
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||||| |||||||||||||| |||||||||| ||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 34687006 - 34687062
Alignment:
Q  38 cacaccggtaataatttgaaaaaatgaca-taattgaatgtaatcacatgtgtgcca 93  Q
    ||||||||||||||||||| ||||||| | |||||||| ||||||| ||||||||||    
T  34687006 cacaccggtaataatttgagaaaatgatattaattgaaagtaatcatatgtgtgcca 34687062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 34709418 - 34709474
Alignment:
Q  38 cacaccggtaataatttgaaaaaatgaca-taattgaatgtaatcacatgtgtgcca 93  Q
    ||||||||||||||||||| ||||||| | |||||||| ||||||| ||||||||||    
T  34709418 cacaccggtaataatttgagaaaatgatattaattgaaagtaatcatatgtgtgcca 34709474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 14268800 - 14268741
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||| || |||||||||||||||||| |||||||| |||||||| ||||| | ||||||    
T  14268800 gacacgtcaacaccggtaataatttgagaaaatgacttaattgaacgtaatgatatgtgt 14268741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 26787789 - 26787746
Alignment:
Q  46 taataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||  |||||||||| |||||||||||||||||||||    
T  26787789 taataatttgcgaaaatgacattattgaatgtaatcacatgtgt 26787746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 32843705 - 32843760
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacat 85  Q
    |||||||| | || |||| |||| ||| ||||||||||||||||||||||||||||    
T  32843705 gacacatcgatactggtagtaatatgagaaaatgacataattgaatgtaatcacat 32843760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 35888682 - 35888635
Alignment:
Q  38 cacaccggtaataatttgaaaaaatgacat-aattgaatgtaatcaca 84  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||    
T  35888682 cacagcggtaataatttgacaaaatgacataaattgaatgtaatcaca 35888635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 39017340 - 39017386
Alignment:
Q  40 caccggtaataatttgaaaaaatgacataattgaatgtaatcacatgt 87  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||    
T  39017340 caccggtaataatttgaaaaa-tggcataattgaatgtaatcatatgt 39017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 16630796 - 16630846
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| ||||||||| | |||||||||||||| ||| |||||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtgt 16630846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 42043270 - 42043208
Alignment:
Q  24 aacaccgacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatg 86  Q
    ||||| |||||||| |||||| ||||||||| | |||||||  |||||||||||||| |||||    
T  42043270 aacacggacacatcaacaccgataataatttaataaaatgaattaattgaatgtaataacatg 42043208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 43065571 - 43065609
Alignment:
Q  51 atttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  43065571 atttgaaaaaatgacataactaaatgtaatcacatgtgt 43065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 35379253 - 35379205
Alignment:
Q  39 acaccggtaataatttgaaaaaa--tgacataattgaatgtaatcacat 85  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||||||||    
T  35379253 acaccgataataatttgaaaaaaaatgagataattgaatgtaatcacat 35379205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 40681983 - 40682024
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataattgaatgtaat 80  Q
    |||||| ||||||||||| |||||||||||||| ||||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 25317138 - 25317170
Alignment:
Q  39 acaccggtaataatttgaaaaaatgacataatt 71  Q
    |||||| ||||||||||||||||||||||||||    
T  25317138 acaccgataataatttgaaaaaatgacataatt 25317170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 59132 - 59176
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||| | |||| |||||||||||||||||||||||||||    
T  59132 gtaataatttaataaaacgacataattgaatgtaatcacatgtgt 59176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 59143 - 59099
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||    
T  59143 gtaataattttaaaaaatgacataactgaatgtaatcatatgtgt 59099  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 21083 - 21141
Alignment:
Q  30 gacacatccacaccggtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||| | ||||||| |||||||| |||||||||||||  |||||||||||||||||||    
T  21083 gacacagcaacaccggcaataattt-aaaaaatgacatagctgaatgtaatcacatgtgt 21141  T

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Target: scaffold0373 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 1268 - 1226
Alignment:
Q  45 gtaataatttgaaaaaatgacataattgaatgtaatcacatgtgt 89  Q
    |||||||||||| |||||||||  |||||||||||||||||||||    
T  1268 gtaataatttgagaaaatgaca--attgaatgtaatcacatgtgt 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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