View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-22 (Length: 120)
Name: Solexa-NF5832-22
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 47435434 - 47435322
Alignment:
| Q |
8 |
gttggctgattctggaaagtccaattgagaaacaactttgccaccactctaaaaaacgaacggcacccaattgagttaagggaagagacaaatcaaaaat |
107 |
Q |
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| T |
47435434 |
gttggctgattctggaaaatccaattgagaaacaactttgccaccactctaaaaaacgaacggcacccaattgagttaagggaagagacaaatcaaaaat |
47435335 |
T |
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| Q |
108 |
aggtaattgaatg |
120 |
Q |
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| T |
47435334 |
aggtaattgaatg |
47435322 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 21413464 - 21413519
Alignment:
| Q |
36 |
gaaacaactttgccaccactctaaaaaacgaacggcacccaattgagttaagggaa |
91 |
Q |
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| T |
21413464 |
gaaacaactttaccaccactctaaaaaatgtacagcacccaattgagttaagggaa |
21413519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 34594521 - 34594563
Alignment:
| Q |
15 |
gattctggaaagtccaattgagaaacaactttgccaccactct |
57 |
Q |
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| T |
34594521 |
gattcaggaaaacccaattgagaaacaactttgccaccactct |
34594563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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