View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-26 (Length: 80)

Name: Solexa-NF5832-26
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-26
Solexa-NF5832-26
[»] chr4 (5 HSPs)
chr4 (7-80)||(30264772-30264845)
chr4 (7-80)||(30287343-30287416)
chr4 (10-80)||(30271700-30271770)
chr4 (10-77)||(30280451-30280515)
chr4 (10-77)||(30304741-30304805)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 30264772 - 30264845
Alignment:
Q  7 actattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264772 actattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatc 30264845  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 30287416 - 30287343
Alignment:
Q  7 actattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287416 actattatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatc 30287343  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 30271700 - 30271770
Alignment:
Q  10 attatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtcatc 80  Q
    |||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| |||||| |||||    
T  30271700 attatggaggagaaacgtggattgataggtaagaagacatgttggaacaaatacatagtttgagaatcatc 30271770  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 30280515 - 30280451
Alignment:
Q  10 attatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtc 77  Q
    |||||||||||||||||||||||||||||||||   |||| ||||| ||||||||| | |||||||||    
T  30280515 attatggaggagaagcgtggattgataggtaag---aaattttggaacaaatacattgtttgagagtc 30280451  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 30304741 - 30304805
Alignment:
Q  10 attatggaggagaagcgtggattgataggtaagaacaaatgttggatcaaatacatagcttgagagtc 77  Q
    |||||||||||||||||||||||||||||||||   |||| ||||| ||||||||| | |||||||||    
T  30304741 attatggaggagaagcgtggattgataggtaag---aaattttggaacaaatacattgtttgagagtc 30304805  T

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