View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-3 (Length: 203)

Name: Solexa-NF5832-3
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-3
Solexa-NF5832-3
[»] chr4 (12 HSPs)
chr4 (35-201)||(22558431-22558593)
chr4 (36-82)||(24099148-24099194)
chr4 (35-82)||(4142836-4142883)
chr4 (35-82)||(13634096-13634143)
chr4 (35-82)||(22611164-22611211)
chr4 (35-82)||(26633752-26633799)
chr4 (35-82)||(28857380-28857427)
chr4 (35-82)||(35348288-35348335)
chr4 (35-78)||(40066140-40066183)
chr4 (35-82)||(56040727-56040774)
chr4 (36-80)||(52061006-52061050)
chr4 (38-82)||(53811012-53811056)
[»] scaffold0884 (1 HSPs)
scaffold0884 (35-78)||(2058-2101)
[»] chr8 (5 HSPs)
chr8 (35-83)||(7677361-7677409)
chr8 (35-82)||(37971246-37971293)
chr8 (35-78)||(20553324-20553367)
chr8 (35-82)||(23230606-23230653)
chr8 (35-81)||(40619153-40619199)
[»] scaffold0017 (1 HSPs)
scaffold0017 (35-82)||(32828-32875)
[»] chr7 (9 HSPs)
chr7 (35-82)||(8001627-8001674)
chr7 (35-78)||(48061385-48061428)
chr7 (35-82)||(12141389-12141436)
chr7 (35-82)||(19296833-19296880)
chr7 (35-82)||(30756900-30756947)
chr7 (35-82)||(34899688-34899735)
chr7 (35-82)||(37837539-37837586)
chr7 (35-82)||(42978573-42978620)
chr7 (35-80)||(26623873-26623918)
[»] chr1 (7 HSPs)
chr1 (35-82)||(5983800-5983847)
chr1 (35-82)||(7337744-7337791)
chr1 (35-82)||(7836877-7836924)
chr1 (35-82)||(45415522-45415569)
chr1 (39-79)||(34528695-34528735)
chr1 (35-82)||(1742245-1742292)
chr1 (35-82)||(11462529-11462576)
[»] chr6 (5 HSPs)
chr6 (35-81)||(23128580-23128626)
chr6 (35-79)||(7515286-7515330)
chr6 (35-82)||(32327298-32327345)
chr6 (35-82)||(33053249-33053296)
chr6 (38-82)||(3913655-3913699)
[»] chr5 (7 HSPs)
chr5 (35-82)||(6012219-6012266)
chr5 (35-82)||(6216859-6216906)
chr5 (35-82)||(9113806-9113853)
chr5 (35-82)||(13007189-13007236)
chr5 (35-82)||(38597757-38597804)
chr5 (35-81)||(24229866-24229912)
chr5 (35-80)||(14082456-14082501)
[»] chr3 (13 HSPs)
chr3 (35-82)||(9998427-9998474)
chr3 (35-82)||(10108196-10108243)
chr3 (35-82)||(10233030-10233077)
chr3 (35-82)||(12050729-12050776)
chr3 (35-82)||(21431585-21431632)
chr3 (35-82)||(29239300-29239347)
chr3 (35-82)||(36461512-36461559)
chr3 (35-82)||(38860201-38860248)
chr3 (35-82)||(40487285-40487332)
chr3 (35-82)||(40556672-40556719)
chr3 (36-82)||(9320018-9320064)
chr3 (35-81)||(45568527-45568573)
chr3 (35-77)||(54148951-54148993)
[»] chr2 (9 HSPs)
chr2 (35-82)||(7646444-7646491)
chr2 (35-82)||(7677955-7678002)
chr2 (35-82)||(12648005-12648052)
chr2 (35-82)||(18763439-18763486)
chr2 (35-82)||(35220296-35220343)
chr2 (35-82)||(36943203-36943250)
chr2 (35-82)||(37876688-37876735)
chr2 (35-81)||(5427951-5427997)
chr2 (36-82)||(27097488-27097534)
[»] scaffold0445 (1 HSPs)
scaffold0445 (35-81)||(1305-1351)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 22558593 - 22558431
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgctcataattaataatgcaagcaagtacattgtttgatgtattcatttgctttc 134  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  22558593 gtgattttatcgtctaagtgcggcattttgttgttcatcgtcttgtgctcataattaataatgcaag----tacattgtttgatgtattcatttgctttc 22558498  T
Q  135 cgctccttgtatgttttatttttaaacattcagccatattaaatttagctcacattttggttctatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22558497 cgctccttgtatgttttatttttaaacattcagccatattaaatttagctcacattttggttttatg 22558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 24099194 - 24099148
Alignment:
Q  36 tgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  24099194 tgatttcgtcgtctaagtgcggcattttgttgttcgtcgtcttgtgc 24099148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 4142883 - 4142836
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  4142883 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 4142836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 13634096 - 13634143
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  13634096 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 13634143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 22611164 - 22611211
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  22611164 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 22611211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 26633799 - 26633752
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  26633799 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 26633752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 28857380 - 28857427
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||||    
T  28857380 gtgatttcatcgtctaagtgcggcgttgtgttgttcgttgtcttgtgc 28857427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 35348288 - 35348335
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  35348288 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 35348335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 40066183 - 40066140
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtctt 78  Q
    ||||||||||||||||| |||||| || ||||||||||||||||    
T  40066183 gtgatttcatcgtctaagtgcggcgttgtgttgttcgtcgtctt 40066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 56040774 - 56040727
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||| ||| |||||| |||||||||||||||||||||||    
T  56040774 gtgatttcgtcgtttaagtgcggcgttttgttgttcgtcgtcttgtgc 56040727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 52061050 - 52061006
Alignment:
Q  36 tgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgt 80  Q
    |||||||||||||||| || |||||| || |||||||||||||||    
T  52061050 tgatttcatcgtctaagtgtggcattgtgatgttcgtcgtcttgt 52061006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 53811012 - 53811056
Alignment:
Q  38 atttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||| || ||||| |||||| |||||||||||||||||||||||    
T  53811012 atttcgtcatctaaatgcggcgttttgttgttcgtcgtcttgtgc 53811056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 2101 - 2058
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtctt 78  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  2101 gtgatttcatcgtctaagtgcggcattttgttgttcgtcgtctt 2058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 7677409 - 7677361
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgct 83  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||||    
T  7677409 gtgatttcatcgtctaattgcggcgttgtgttgttcgtcgtcttgtgct 7677361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 37971246 - 37971293
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  37971246 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 37971293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 20553367 - 20553324
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtctt 78  Q
    |||||||| |||||||| |||||| |||||||||||||||||||    
T  20553367 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtctt 20553324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 23230606 - 23230653
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| ||||||  ||||||||||||||||||||||    
T  23230606 gtgatttcgtcgtctaagtgcggcgatttgttgttcgtcgtcttgtgc 23230653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 40619199 - 40619153
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    ||||||||||||||||| |||||| || ||||||| |||||||||||    
T  40619199 gtgatttcatcgtctaagtgcggcgttgtgttgtttgtcgtcttgtg 40619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 32875 - 32828
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  32875 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 32828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 8001674 - 8001627
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  8001674 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 8001627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 48061385 - 48061428
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtctt 78  Q
    |||||||| |||||||| ||||||||||||||||||||||||||    
T  48061385 gtgatttcgtcgtctaagtgcggcattttgttgttcgtcgtctt 48061428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 12141436 - 12141389
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  12141436 gtgatttcgtcgtctaagtgcggcgttttgttgtttgtcgtcttgtgc 12141389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 19296833 - 19296880
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  19296833 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 19296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 30756947 - 30756900
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  30756947 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 30756900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 34899735 - 34899688
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  34899735 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 34899688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 37837586 - 37837539
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  37837586 gtgatttcatcatctaagtgcggcgttgtgttgttcgtcgtcttgtgc 37837539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 42978573 - 42978620
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  42978573 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 42978620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 26623918 - 26623873
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgt 80  Q
    ||||||||||||||| | |||||| || ||||||||||||||||||    
T  26623918 gtgatttcatcgtctgagtgcggcgttgtgttgttcgtcgtcttgt 26623873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 5983800 - 5983847
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  5983800 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 5983847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 7337791 - 7337744
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||    
T  7337791 gtgatttcatcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 7337744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 7836924 - 7836877
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||    
T  7836924 gtgatttcatcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 7836877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 45415522 - 45415569
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  45415522 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 45415569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 34528695 - 34528735
Alignment:
Q  39 tttcatcgtctaactgcggcattttgttgttcgtcgtcttg 79  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  34528695 tttcatcgtctaagtgcggcattgtgttgttcgtcgtcttg 34528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 1742245 - 1742292
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  1742245 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 1742292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 11462576 - 11462529
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| || ||||| | ||||||||||||||||||||||||||||    
T  11462576 gtgatttcgtcatctaagtccggcattttgttgttcgtcgtcttgtgc 11462529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 23128580 - 23128626
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    ||||||||||||||||| |||||| || |||||||||||||||||||    
T  23128580 gtgatttcatcgtctaagtgcggcgttgtgttgttcgtcgtcttgtg 23128626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 7515330 - 7515286
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttg 79  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||    
T  7515330 gtgatttcgtcgtctaagtgcggcgttttgttgttcgtcgtcttg 7515286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 32327345 - 32327298
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||||| |||||| |||||| || ||||||||||||||||||||    
T  32327345 gtgatttcatagtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 32327298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 33053296 - 33053249
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  33053296 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 33053249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 3913699 - 3913655
Alignment:
Q  38 atttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||| |||||||| |||||| || ||||||||||||||||||||    
T  3913699 atttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 3913655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 6012266 - 6012219
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||  || ||||||||||||||||||||    
T  6012266 gtgatttcatcgtctaagtgcggtgttgtgttgttcgtcgtcttgtgc 6012219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 6216859 - 6216906
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  6216859 gtgatttcgtcgtctaaatgcggcgttatgttgttcgtcgtcttgtgc 6216906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 9113853 - 9113806
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  9113853 gtgatttcgtcgtctaagtgcggcgttctgttgttcgtcgtcttgtgc 9113806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 13007189 - 13007236
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  13007189 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 13007236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 38597757 - 38597804
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  38597757 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 38597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 24229912 - 24229866
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||||    
T  24229912 gtgatttcgtcatctaagtgcggcgttttgttgttcgtcgtcttgtg 24229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 14082501 - 14082456
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgt 80  Q
    ||||||||||||||||| || ||| || ||||||||||||||||||    
T  14082501 gtgatttcatcgtctaagtgtggcgttgtgttgttcgtcgtcttgt 14082456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 9998427 - 9998474
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  9998427 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 9998474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 10108196 - 10108243
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  10108196 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 10108243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 10233030 - 10233077
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  10233030 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 10233077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 12050776 - 12050729
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| ||||||||  ||||| |||||||||||||||||||||||    
T  12050776 gtgatttcgtcgtctaagcgcggcgttttgttgttcgtcgtcttgtgc 12050729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 21431585 - 21431632
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||  ||||||| ||||||||| ||||||||||||||||||||    
T  21431585 gtgatttcgccgtctaagtgcggcattgtgttgttcgtcgtcttgtgc 21431632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 29239300 - 29239347
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||| | |||||| || ||||||||||||||||||||    
T  29239300 gtgatttcatcgtctgagtgcggcgttgtgttgttcgtcgtcttgtgc 29239347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 36461559 - 36461512
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  36461559 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 36461512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 38860248 - 38860201
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||| | |||||||||||||||||||||||    
T  38860248 gtgatttcgtcgtctaagtgcgacgttttgttgttcgtcgtcttgtgc 38860201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 40487285 - 40487332
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  40487285 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 40487332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 40556672 - 40556719
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  40556672 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 40556719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 9320018 - 9320064
Alignment:
Q  36 tgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||| | |||||| ||||||||| ||||||||||||||||||||    
T  9320018 tgatttcgttgtctaaatgcggcattgtgttgttcgtcgtcttgtgc 9320064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 45568573 - 45568527
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    |||||||| |||||||| |||||| || |||||||||||||||||||    
T  45568573 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtg 45568527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 54148951 - 54148993
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtct 77  Q
    |||||||| |||||||| ||||||||| |||||||||||||||    
T  54148951 gtgatttcgtcgtctaagtgcggcattgtgttgttcgtcgtct 54148993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7646444 - 7646491
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  7646444 gtgatttcgtcgtctaagtgcggcgttatgttgttcgtcgtcttgtgc 7646491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 7678002 - 7677955
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  7678002 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 7677955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 12648052 - 12648005
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||  || ||||||||||||||||||||    
T  12648052 gtgatttcatcgtctaagtgcggtgttgtgttgttcgtcgtcttgtgc 12648005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 18763439 - 18763486
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||||||||||||| |||||  || ||||||||||||||||||||    
T  18763439 gtgatttcatcgtctaagtgcggtgttgtgttgttcgtcgtcttgtgc 18763486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 35220296 - 35220343
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| ||||||||| |||||||| |||||||||||    
T  35220296 gtgatttcgtcgtctaagtgcggcattatgttgttcatcgtcttgtgc 35220343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 36943250 - 36943203
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||    
T  36943250 gtgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 36943203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 37876735 - 37876688
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  37876735 gtgatttggtcgtctaagtgcggcgttttgttgttcgtcgtcttgtgc 37876688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 5427997 - 5427951
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    |||||||| ||||| || |||||| ||||||||||||||||||||||    
T  5427997 gtgatttcgtcgtccaagtgcggcgttttgttgttcgtcgtcttgtg 5427951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 27097534 - 27097488
Alignment:
Q  36 tgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtgc 82  Q
    ||||||| |||||||| |||||| || ||||||||||||||||||||    
T  27097534 tgatttcgtcgtctaagtgcggcgttgtgttgttcgtcgtcttgtgc 27097488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 1305 - 1351
Alignment:
Q  35 gtgatttcatcgtctaactgcggcattttgttgttcgtcgtcttgtg 81  Q
    |||||||| |||||||| |||||| || |||||||||||||||||||    
T  1305 gtgatttcttcgtctaagtgcggcgttgtgttgttcgtcgtcttgtg 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University