View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-4 (Length: 170)
Name: Solexa-NF5832-4
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-4 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 8e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 8e-69
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 11729291 - 11729430
Alignment:
| Q |
29 |
caaattatgtggtccagaggaaagaaactaatagaaggtatgtatgttctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
128 |
Q |
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| T |
11729291 |
caaattatgtggtccaaaggaaagaaactaatagaaggtatgtatgttctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
11729390 |
T |
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| Q |
129 |
cattcttttgcaaataaattttcagtagcatctgattcaa |
168 |
Q |
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| T |
11729391 |
cattcttttgcaaataaattttcagtagcatctgattcaa |
11729430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 8e-69
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 23739603 - 23739742
Alignment:
| Q |
29 |
caaattatgtggtccagaggaaagaaactaatagaaggtatgtatgttctctctaatctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
128 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739603 |
caaattatgtggtccaaaggaaagaaactaatagaaggtatgtatgttctctctattctatttctcaatcatggttgtgtgatatccagtgacatgtgtt |
23739702 |
T |
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| Q |
129 |
cattcttttgcaaataaattttcagtagcatctgattcaa |
168 |
Q |
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| T |
23739703 |
cattcttttgcaaataaattttcagtagcatctgattcaa |
23739742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 23739500 - 23739532
Alignment:
| Q |
2 |
gaggaaacgcaaacccatcggcgaccgcaaatt |
34 |
Q |
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| T |
23739500 |
gaggaaacgcaaacccatgggcgaccgcaaatt |
23739532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 43043142 - 43043102
Alignment:
| Q |
31 |
aattatgtggtccagaggaaagaaactaatagaaggtatgt |
71 |
Q |
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| T |
43043142 |
aattatgtagtccataggaaagaaactaatagaagatatgt |
43043102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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