View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5832-9 (Length: 143)
Name: Solexa-NF5832-9
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 47434379 - 47434518
Alignment:
| Q |
4 |
aagaaaggagaaataaaggagaaagaagcatgtttaattttttaaagaacaaacatatcctcttatcctaaaaactaatgtactttataattactgaatg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47434379 |
aagaaaggagaaataaaggagaaagaagcatgtttaattttttaaagaacaaacatatcctcttatcctaaaaactaatgtactttataattactgaata |
47434478 |
T |
|
| Q |
104 |
gaattacttatcaaattactggtactttattattttaatc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47434479 |
gaattacttatcaaattactggtactttgttattttaatc |
47434518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University