View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-1 (Length: 326)
Name: Solexa-NF5834-1
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 55163675 - 55163359
Alignment:
| Q |
8 |
gttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaaaagttaaggaggttcataaataaaaattaagtcacagtgtc |
107 |
Q |
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| T |
55163675 |
gttacaattctccctgagaactcggactggtagggtttacaaagaaaggttctagtgaa--gttaaggaggttcataaataaaaattaagtcacagtgtc |
55163578 |
T |
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| Q |
108 |
acagggacatgtttagtttcttcacctctacatagagagaaagttgaatctatagtcttgttgcgatactcgaccctaattctatattctcctaagaatc |
207 |
Q |
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| T |
55163577 |
acagggacatgtttagtttcttcacctctacatagagagaaagttgaatttatagtcttgttgcgatactcgaccctaattctatattctcctaagaatc |
55163478 |
T |
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| Q |
208 |
cataaaagctatttgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtttatccaccacatcacctgatggtaagtt |
307 |
Q |
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| T |
55163477 |
cataaaagctatgtgaaccatgctcatctgtgataccttgtacagaactagtttgccactcttgaagaagtttatccaccacatcacctgatggtaagtt |
55163378 |
T |
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| Q |
308 |
gttgaaatcattgtctgtg |
326 |
Q |
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| T |
55163377 |
gttgaaatcattgtctgtg |
55163359 |
T |
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