View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-11 (Length: 145)
Name: Solexa-NF5834-11
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-11 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 4e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47475754 - 47475895
Alignment:
| Q |
1 |
gacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttatttgtttttattatagttaggctttcgtatctaacaaaagt |
100 |
Q |
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| T |
47475754 |
gacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttatttgtttttattatagttaggttttcgtatctaacaaaagt |
47475853 |
T |
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| Q |
101 |
gtattttttggtgtaaatacgagtgtacatagttcttctctt |
142 |
Q |
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| T |
47475854 |
gtattttttggtgtaaatacgagtgtacatagttcttttctt |
47475895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 24801949 - 24801999
Alignment:
| Q |
92 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttctctt |
142 |
Q |
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| T |
24801949 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttctt |
24801999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47472512 - 47472573
Alignment:
| Q |
1 |
gacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcatttattt |
62 |
Q |
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| T |
47472512 |
gacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgcatttattt |
47472573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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