View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5834-12 (Length: 143)

Name: Solexa-NF5834-12
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5834-12
Solexa-NF5834-12
[»] chr4 (6 HSPs)
chr4 (4-140)||(47113480-47113622)
chr4 (6-135)||(40052801-40052934)
chr4 (6-135)||(40053352-40053485)
chr4 (6-135)||(39219971-39220104)
chr4 (6-135)||(39226496-39226629)
chr4 (55-103)||(235970-236017)
[»] chr1 (2 HSPs)
chr1 (6-135)||(16860564-16860697)
chr1 (14-103)||(19405868-19405959)
[»] chr3 (3 HSPs)
chr3 (3-93)||(8546613-8546703)
chr3 (6-130)||(29672982-29673110)
chr3 (87-140)||(8546760-8546813)
[»] chr5 (1 HSPs)
chr5 (6-135)||(38486120-38486253)
[»] chr7 (2 HSPs)
chr7 (29-140)||(39510532-39510640)
chr7 (41-103)||(47018942-47019002)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 3e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 47113622 - 47113480
Alignment:
Q  4 ttggagattcttaattgattcatata----attgtgtacacatatgaaaatggtctttat--gtgtattatacacaattatatgaagttaaagatgatca 97  Q
    ||||| ||||||||||||||||||||    |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  47113622 ttggaaattcttaattgattcatatagtcaattgtgtacacatatggaaatggtctttatatgtgtattatacacaattatatgaagttaaagatggtca 47113523  T
Q  98 atgtctccatattagtcaaacacgtttttctttcttttaagta 140  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  47113522 atgtcttcatattagtcaaacacgtttttctttcttttaagta 47113480  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 40052934 - 40052801
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgt 101  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40052934 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtattaaacacaattatatgaagttaaagatggtcaatgt 40052835  T
Q  102 ctccatattagtcaaacacgtttttctttctttt 135  Q
    || |||||||||||||||||||||||||| ||||    
T  40052834 cttcatattagtcaaacacgtttttctttttttt 40052801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 40053352 - 40053485
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgt 101  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40053352 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtattaaacacaattatatgaagttaaagatggtcaatgt 40053451  T
Q  102 ctccatattagtcaaacacgtttttctttctttt 135  Q
    || |||||||||||||||||||||||||| ||||    
T  40053452 cttcatattagtcaaacacgtttttctttttttt 40053485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 39219971 - 39220104
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtat--tatacacaattatatgaagttaaagatgatcaat 99  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||| |||||    
T  39219971 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtgtgttatacacaattatatgaagttaaagatggtcaat 39220070  T
Q  100 gtctccatattagtcaaacacgtttttctttctttt 135  Q
    |||| ||||||||||||  |||||||||||||||||    
T  39220071 gtcttcatattagtcaa--acgtttttctttctttt 39220104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 39226496 - 39226629
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtat--tatacacaattatatgaagttaaagatgatcaat 99  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||| |||||    
T  39226496 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtgtgttatacacaattatatgaagttaaagatggtcaat 39226595  T
Q  100 gtctccatattagtcaaacacgtttttctttctttt 135  Q
    |||| ||||||||||||  |||||||||||||||||    
T  39226596 gtcttcatattagtcaa--acgtttttctttctttt 39226629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 235970 - 236017
Alignment:
Q  55 tttatgtgtattatacacaattatatgaagttaaagatgatcaatgtct 103  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||||||||    
T  235970 tttatgtatattatacacaattatatgaaattaaa-atggtcaatgtct 236017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 16860697 - 16860564
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgt 101  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16860697 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtattaaacacaattatatgaagttaaagatgatcaatgt 16860598  T
Q  102 ctccatattagtcaaacacgtttttctttctttt 135  Q
    || |||||||||||||||||||||| ||| ||||    
T  16860597 cttcatattagtcaaacacgtttttttttttttt 16860564  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 19405868 - 19405959
Alignment:
Q  14 ttaattgattcatata----attgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgtct 103  Q
    ||||||||||||||||    |||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  19405868 ttaattgattcatatagtcaattgtgtatatatatgaaaatggt-tttatgtatattatacacaattatatgaagttaaa-atggtcaatgtct 19405959  T

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Target: chr3 (Bit Score: 87; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 8546613 - 8546703
Alignment:
Q  3 gttggagattcttaattgattcatataattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatg 93  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546613 gttggagattcttaattgattcatataattgtgcacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatg 8546703  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 29673110 - 29672982
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgt 101  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  29673110 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgtgtattaaacacaattatatgaagttaaaaatggtcaatgt 29673011  T
Q  102 ctccatattagtcaaacacgtttttcttt 130  Q
    || ||||||||||||||||||||||||||    
T  29673010 cttcatattagtcaaacacgtttttcttt 29672982  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 8546760 - 8546813
Alignment:
Q  87 aaagatgatcaatgtctccatattagtcaaacacgtttttctttcttttaagta 140  Q
    ||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||    
T  8546760 aaagatggtcattgtcttcataatagtcaaacacgtttttctttcttttaagta 8546813  T

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Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 38486120 - 38486253
Alignment:
Q  6 ggagattcttaattgattcatat----aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgt 101  Q
    |||||||||||||| ||||||||    ||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||| ||| |||||||    
T  38486120 ggagattcttaatttattcatatggtcaattgtgtacacatatggaaatgatctttatgcgtattaaacacaattatatgaagttaaatatggtcaatgt 38486219  T
Q  102 ctccatattagtcaaacacgtttttctttctttt 135  Q
    || |||||||||||||||||||||||||| ||||    
T  38486220 cttcatattagtcaaacacgtttttctttttttt 38486253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 39510640 - 39510532
Alignment:
Q  29 aattgtgtacacatatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgtctccatattagtcaaacacgtttttct 128  Q
    ||||||||| | ||| | |||||||| | |||| |||||||||||||||||| |||||||||||| ||||||||| ||| ||||  |||||  |||||||    
T  39510640 aattgtgtatatataaggaaatggtcatcatgtatattatacacaattatataaagttaaagatggtcaatgtcttcattttag--aaaca-ttttttct 39510544  T
Q  129 ttcttttaagta 140  Q
    ||||||||||||    
T  39510543 ttcttttaagta 39510532  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 47019002 - 47018942
Alignment:
Q  41 atatgaaaatggtctttatgtgtattatacacaattatatgaagttaaagatgatcaatgtct 103  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||||||||    
T  47019002 atatggaaatggt-tttatgtatattatacacaattatatgaaattaaa-atggtcaatgtct 47018942  T

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