View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-13 (Length: 142)
Name: Solexa-NF5834-13
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 45225054 - 45225191
Alignment:
| Q |
3 |
atgaaacataatcatgtcaacgttgtgccttatcctgttgtttgtcttaactcttacaatactttagcctttcatgataaaaacataaatctcacaaaaa |
102 |
Q |
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| T |
45225054 |
atgaaacataatcatgtcaacgttgtgccttatcctgttgtttgtcttaactctta--atactttagcctttcatgattaaaacataaatctcacaaaaa |
45225151 |
T |
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| Q |
103 |
taaaactcaacatatagatttattttatattttgtccaat |
142 |
Q |
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| T |
45225152 |
taaaactcaacatatagatatattttatattttgtccaat |
45225191 |
T |
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