View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-16 (Length: 132)
Name: Solexa-NF5834-16
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-16 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5217467 - 5217336
Alignment:
| Q |
1 |
gaactgagagattgtctgccaacacacatgctcgcatccaagcataacatttatcatcaagacctaatatctttaaaagatattccaggaaattccagct |
100 |
Q |
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| T |
5217467 |
gaactgagagattgcctgcaaacacacatgctcgcatccaagcataacatttatcatcaaaacttaatatcttcaaaagatattccaggaaattccagct |
5217368 |
T |
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| Q |
101 |
caccgaaacataagctttttcaaagtccactt |
132 |
Q |
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| T |
5217367 |
caccaaagcataagctttttcaaagtccactt |
5217336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 2387041 - 2387140
Alignment:
| Q |
33 |
cgcatccaagcataacatttatcatcaagacctaatatctttaaaagatattccaggaaattccagctcaccgaaacataagctttttcaaagtccactt |
132 |
Q |
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| T |
2387041 |
cgcatccaagcacaccacttatcatcaaaaccaaatctcttcaatagatattcgaaaaaacttcagctcatcgaatgataagcattctcaaagtccactt |
2387140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 30862583 - 30862457
Alignment:
| Q |
3 |
actgagagattgtctgccaacacacatgctcgcatccaagcataacatttatcatcaagacctaatatctttaaaagatattccaggaaattccagctca |
102 |
Q |
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| T |
30862583 |
actgagagattgcctgcaaacacacatgctcgcatccaagcacaccacttatcatcaaaaccaaatctcttcaaaagatattccaggaaaccccagctca |
30862484 |
T |
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| Q |
103 |
ccgaaacataagctttttcaaagtcca |
129 |
Q |
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| T |
30862483 |
ctgaatcataagctttctaaaagtcca |
30862457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 16573497 - 16573373
Alignment:
| Q |
7 |
agagattgtctgccaacacacatgctcgcatccaagcataacatttatcatcaagacctaatatctttaaaagatattccaggaaattccagctcaccga |
106 |
Q |
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| T |
16573497 |
agagattacctgcaaacacacatgctcacatccaagc-caccacttatcatcaaaaccaaatctcttcaacaaatattccatgaaattctagctcactga |
16573399 |
T |
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| Q |
107 |
aacataagctttttcaaagtccactt |
132 |
Q |
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| T |
16573398 |
atcataagctttctcaaaatccactt |
16573373 |
T |
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