View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5834-17 (Length: 131)

Name: Solexa-NF5834-17
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5834-17
Solexa-NF5834-17
[»] chr1 (2 HSPs)
chr1 (34-129)||(4629639-4629734)
chr1 (37-80)||(16856580-16856624)
[»] chr7 (3 HSPs)
chr7 (35-95)||(1471182-1471242)
chr7 (37-96)||(5174444-5174503)
chr7 (33-122)||(4225845-4225934)
[»] chr5 (4 HSPs)
chr5 (35-126)||(4088533-4088623)
chr5 (35-126)||(18695407-18695498)
chr5 (39-116)||(21012665-21012742)
chr5 (35-126)||(6940041-6940132)
[»] chr3 (4 HSPs)
chr3 (35-126)||(52485562-52485652)
chr3 (35-68)||(23155330-23155363)
chr3 (35-80)||(45754774-45754819)
chr3 (33-80)||(53718142-53718189)
[»] chr2 (4 HSPs)
chr2 (33-116)||(17394965-17395048)
chr2 (36-126)||(23352800-23352889)
chr2 (33-97)||(5032041-5032105)
chr2 (35-116)||(33725471-33725553)
[»] chr8 (3 HSPs)
chr8 (36-97)||(35564407-35564467)
chr8 (33-77)||(157194-157238)
chr8 (33-80)||(22960308-22960355)
[»] chr4 (4 HSPs)
chr4 (36-97)||(624204-624265)
chr4 (35-122)||(1140702-1140789)
chr4 (38-97)||(23662211-23662270)
chr4 (35-126)||(42815493-42815584)
[»] chr6 (1 HSPs)
chr6 (33-97)||(33656888-33656952)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 9e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 4629639 - 4629734
Alignment:
Q  34 atgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaacaa 129  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||| ||||||    
T  4629639 atgtgttatttgaacaactattagattgacaacttatttgacaaccacatctttacaaagaaaaagtaggtattatcacgaaaactaaaacaacaa 4629734  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 16856624 - 16856580
Alignment:
Q  37 tgttatttgaacaacta-ttaaattgataacttatttgacaacca 80  Q
    ||||||||||||||||| || |||||| |||||||||||||||||    
T  16856624 tgttatttgaacaactaatttaattgacaacttatttgacaacca 16856580  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 1471182 - 1471242
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaa 95  Q
    |||||||||||||||||||||  || || ||||||||||||||||| |  |||||||||||    
T  1471182 tgtgttatttgaacaactatttgatagacaacttatttgacaaccataaatttacaaagaa 1471242  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 5174444 - 5174503
Alignment:
Q  37 tgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaa 96  Q
    ||||||||||||| ||||| | |||||||  ||||||||||||| || ||||||||||||    
T  5174444 tgttatttgaacatctatttatttgataatctatttgacaaccatatttttacaaagaaa 5174503  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 4225934 - 4225845
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaa 122  Q
    |||||||||||||||||| | || |  ||| ||||||||||||||||| |  |||| |||||||| ||| |||||  ||||||| |||||    
T  4225934 gatgtgttatttgaacaattttttaggtgacaacttatttgacaaccatagttttataaagaaaaagtaggtattgacacgaaaaccaaa 4225845  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 4088623 - 4088533
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    ||||||||||||||| |||||   |||| ||| ||| |||||| || || ||||||||| ||| |||||||||| ||||||| |||||||||    
T  4088623 tgtgttatttgaacatctatttttttgacaacctatgtgacaatcatatttttacaaag-aaatgtatgtattagcacgaaaaccaaagcaa 4088533  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 18695498 - 18695407
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    ||||||||||||||||| |||  || || ||||||||||||||||| |  ||||||||| ||| ||| || ||| |||||||  ||||||||    
T  18695498 tgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttagcacgaaaatcaaagcaa 18695407  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 21012742 - 21012665
Alignment:
Q  39 ttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaa 116  Q
    ||||||||||||| ||| |||||| || |||||||| || ||||  ||||||||||||| ||| |||||  |||||||    
T  21012742 ttatttgaacaaccatttaattgacaatttatttgataaacacaaatttacaaagaaaaagtaggtattgacacgaaa 21012665  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 6940041 - 6940132
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    ||||||||||||||||| |||  || || ||||||||||||||||| |  ||||||||| ||| ||| || ||  |||||||  ||||||||    
T  6940041 tgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaa 6940132  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 52485652 - 52485562
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    ||||||||||||||| |||||   |||| ||| || | |||||||| || ||||||||||||| |||||||||  ||||||| |||||||||    
T  52485652 tgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaa-gtatgtattggcacgaaaaccaaagcaa 52485562  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 23155330 - 23155363
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataactt 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  23155330 tgtgttatttgaacaactatttaattgataactt 23155363  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 45754819 - 45754774
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaacca 80  Q
    ||||||||||||||||| |||  |||||||||||||| ||||||||    
T  45754819 tgtgttatttgaacaaccatttgattgataacttattagacaacca 45754774  T

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Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 53718189 - 53718142
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaacca 80  Q
    |||||||||||||||||||| ||  | ||| |||||||||||||||||    
T  53718189 gatgtgttatttgaacaacttttttagtgacaacttatttgacaacca 53718142  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 17394965 - 17395048
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaa 116  Q
    |||||||||||||||||||| ||    ||| ||||||||||||||||| |  |||| |||||||||||| |||||  |||||||    
T  17394965 gatgtgttatttgaacaactttttgggtgacaacttatttgacaaccatagttttataaagaaaacgtaggtattgacacgaaa 17395048  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 23352800 - 23352889
Alignment:
Q  36 gtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    |||||||||||||||| |||   |||| |||||||  |||||||| |  ||||||||||||| |||||||||  ||||||| |||||||||    
T  23352800 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataa-tttacaaagaaaaagtatgtatttgcacgaaaaccaaagcaa 23352889  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 5032105 - 5032041
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaa 97  Q
    |||||||||||||||||||  ||  || || ||||||||||||||||| |  |||||||||||||    
T  5032105 gatgtgttatttgaacaaccttttgatagacaacttatttgacaaccataaatttacaaagaaaa 5032041  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 33725553 - 33725471
Alignment:
Q  35 tgtgttatttgaacaac--tattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaa 116  Q
    |||||||||||||||||  |||| ||| |||||||||| ||||||||| |  |||||||| |||| ||||||||| | ||||||    
T  33725553 tgtgttatttgaacaaccatatttaatcgataacttatatgacaaccata-atttacaaataaaaagtatgtatttttacgaaa 33725471  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 35564467 - 35564407
Alignment:
Q  36 gtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaa 97  Q
    |||||||||||||||||| |  | ||| ||||||||||||||||| | ||||||||||||||    
T  35564467 gtgttatttgaacaactaatttagtgacaacttatttgacaaccata-ctttacaaagaaaa 35564407  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 157238 - 157194
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaa 77  Q
    ||||||||||||||||||| |||  ||||| ||||||||||||||    
T  157238 gatgtgttatttgaacaacaatttgattgacaacttatttgacaa 157194  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 22960308 - 22960355
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaacca 80  Q
    |||||||||||| |||||| |||  ||||| |||||||||||||||||    
T  22960308 gatgtgttatttaaacaacaatttgattgacaacttatttgacaacca 22960355  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 624204 - 624265
Alignment:
Q  36 gtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaa 97  Q
    |||||||||||||||||| |    ||| ||||||||||||||||| || |||||||||||||    
T  624204 gtgttatttgaacaactaatttggtgacaacttatttgacaaccatatttttacaaagaaaa 624265  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 1140789 - 1140702
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaa 122  Q
    |||||||||||||||| ||||  |||   ||||||| ||||||||| |  ||||||||||||| ||| |||||  ||||||| |||||    
T  1140789 tgtgttatttgaacaattattttattcgcaacttatgtgacaaccatagatttacaaagaaaaagtaagtattgacacgaaaaccaaa 1140702  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 23662211 - 23662270
Alignment:
Q  38 gttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaa 97  Q
    |||||||||||||| ||| |||||| || |||||||| ||||| |  |||||||||||||    
T  23662211 gttatttgaacaaccatttaattgacaatttatttgataaccataaatttacaaagaaaa 23662270  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 42815584 - 42815493
Alignment:
Q  35 tgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaacgtatgtattatcacgaaagccaaagcaa 126  Q
    ||||||||||||||||| |||  || || ||||||||||||||||| |  ||||||||| ||| ||| || ||  |||||||  ||||||||    
T  42815584 tgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggtttttgcacgaaaatcaaagcaa 42815493  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 33656952 - 33656888
Alignment:
Q  33 gatgtgttatttgaacaactattaaattgataacttatttgacaaccacatctttacaaagaaaa 97  Q
    ||||||||||||||||||| |||  ||||| || |||||||||||||| |  |||||||| ||||    
T  33656952 gatgtgttatttgaacaaccatttgattgacaatttatttgacaaccataaatttacaaaaaaaa 33656888  T

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