View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5834-2 (Length: 250)

Name: Solexa-NF5834-2
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5834-2
Solexa-NF5834-2
[»] chr1 (3 HSPs)
chr1 (24-242)||(42837135-42837354)
chr1 (33-185)||(35598595-35598750)
chr1 (26-185)||(35599177-35599341)
[»] scaffold0368 (1 HSPs)
scaffold0368 (24-141)||(13453-13569)
[»] chr4 (4 HSPs)
chr4 (87-155)||(50234460-50234528)
chr4 (87-193)||(11658169-11658275)
chr4 (24-82)||(11658538-11658596)
chr4 (46-82)||(50234545-50234581)
[»] scaffold1463 (1 HSPs)
scaffold1463 (87-155)||(87-155)
[»] chr2 (4 HSPs)
chr2 (87-147)||(19586484-19586544)
chr2 (24-82)||(7390370-7390428)
chr2 (24-82)||(19586684-19586742)
chr2 (87-147)||(7390568-7390628)
[»] chr3 (1 HSPs)
chr3 (24-82)||(51655508-51655566)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 42837354 - 42837135
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattataacttt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42837354 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataacttt 42837255  T
Q  124 ttcttcattgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctttctctgtgctcctccacaaattcaataccttacaatc 222  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| | |      ||||||||||||| |||||    
T  42837254 ttcttcattgttagaatagtttttgttctttttttcattgttagttgttgtatttcgtttctttctctgtgtttcagtctcaattcaataccttgcaatc 42837155  T
Q  223 atgccacttatctttttatg 242  Q
    ||||||||| ||||||||||    
T  42837154 atgccacttctctttttatg 42837135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 35598595 - 35598750
Alignment:
Q  33 tattgattgtgtgaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattataactttttcttca 130  Q
    |||||||| |||| |||||  |||||| ||||  |||||| |||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||    
T  35598595 tattgattttgtgcattttgataattttgaatctttgacaatagggtttgaaaattgttgattttgatatgtgattgtgtgaaatatagctttttcttca 35598694  T
Q  131 ttgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctt 185  Q
    |||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||    
T  35598695 ttgttagattagtttttgttctttttttcattgttagttgttgtatttcgtttctt 35598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 35599177 - 35599341
Alignment:
Q  26 atgttcatattgattgtgtgaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattata-actt 122  Q
    |||||||||||||||||||| |||||  |||||| ||||  |||||| |||||||||||||||||||||||||||| ||||||||||||||||||  |||    
T  35599177 atgttcatattgattgtgtgcattttgataattttgaatccttgacaatagggtttgaaaatcgttgattttgatatgtgattgtgtgaattatagtctt 35599276  T
Q  123 tttcttcattgttagaatagtttttgttcttttct--catcgttagttgttgtatttcgtttctt 185  Q
    ||| |  ||||||||| |||||||||||||||| |   || ||||||||||||||||||||||||    
T  35599277 tttttctattgttagattagtttttgttctttttttctattgttagttgttgtatttcgtttctt 35599341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 13453 - 13569
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattataacttt 123  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||    
T  13453 tcatgttcatattgattgtgtgaatttttctaatttccaatttgacattagggtttg-aaatcgttgattttgatatgtgattgtgtgaattatactttt 13551  T
Q  124 ttcttcattgttagaata 141  Q
    ||||||||||||||||||    
T  13552 ttcttcattgttagaata 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 50234528 - 50234460
Alignment:
Q  87 gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttctttt 155  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50234528 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagtttttgttctttt 50234460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 11658275 - 11658169
Alignment:
Q  87 gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctt 185  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| |||| |||| ||||||| |||||  ||||| |||    
T  11658275 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttctttttttcattgttagtttttgta-atcgttactt 11658177  T
Q  186 tctctgtg 193  Q
    ||||||||    
T  11658176 tctctgtg 11658169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 11658596 - 11658538
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa 82  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  11658596 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 11658538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 50234581 - 50234545
Alignment:
Q  46 aatttttctaatttcgaatttgacattagggtttgaa 82  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  50234581 aattttgctaatttcgaatttgacattagggtatgaa 50234545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 87 - 155
Alignment:
Q  87 gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttctttt 155  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  87 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagtttttgttctttt 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 19586544 - 19586484
Alignment:
Q  87 gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagttttt 147  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  19586544 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagttttt 19586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 7390370 - 7390428
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa 82  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7390370 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 7390428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 19586742 - 19586684
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa 82  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  19586742 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 19586684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 7390568 - 7390628
Alignment:
Q  87 gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagttttt 147  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  7390568 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttt 7390628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 51655508 - 51655566
Alignment:
Q  24 tcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa 82  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  51655508 tcatgttcatattgatagtgtgaattttgctaattttgaatttgacattagggtttgaa 51655566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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