View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-21 (Length: 127)
Name: Solexa-NF5834-21
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 5217183 - 5217301
Alignment:
| Q |
9 |
ttttagctttaaggttggctttattgatggacaaaatcatttcgctaaaccagtcaactttccttaaaggtgggcaattgatggatggagtggtggcggt |
108 |
Q |
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| T |
5217183 |
ttttagctttaaggttggcttcagtgatggacaaaatcatttcgctaaaccagtcaaatttccttaaaggtgggcaattggtggatggagtggtggcggt |
5217282 |
T |
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| Q |
109 |
caatgaggttgtggatata |
127 |
Q |
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| T |
5217283 |
caatgaggttgtggatata |
5217301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 2387230 - 2387178
Alignment:
| Q |
72 |
ttaaaggtgggcaattgatggatggagtggtggcggtcaatgaggttgtggat |
124 |
Q |
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| T |
2387230 |
ttaaaggtaggcaattggtggatggagtagtggcggtaaatgaggttgtggat |
2387178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 30862299 - 30862416
Alignment:
| Q |
7 |
agttttagctttaaggttggctttattgatggacaaaatcatttcgctaaaccagtcaactttccttaaaggtgggcaattgatggatggagtggtggcg |
106 |
Q |
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| T |
30862299 |
agttttagcttcaaggttcacttcagtgatggataaaatcatttcgccaaaccagtcagctttccttaaagggagataattggtggatagagtggtggtg |
30862398 |
T |
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| Q |
107 |
gtcaatgaggttgtggat |
124 |
Q |
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| T |
30862399 |
gtcaatgaggttgtggat |
30862416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 12077036 - 12077102
Alignment:
| Q |
56 |
aaccagtcaactttccttaaaggtgggcaattgatggatggagtggtggcggtcaatgaggttgtgga |
123 |
Q |
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| T |
12077036 |
aaccagtcagctttacttaaaggtaggcaattggtggttggagtggtagggg-caatgaggttgtgga |
12077102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 16573266 - 16573335
Alignment:
| Q |
56 |
aaccagtcaa-ctttccttaaaggtgggcaattgatggatggagtggtggcggtcaatgaggttgtggat |
124 |
Q |
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| T |
16573266 |
aaccagtcaaactttccttaaaggtagggaattggtggacggagtgctggcggtcaatgaggttgtggat |
16573335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 25058036 - 25057932
Alignment:
| Q |
16 |
tttaaggttggctttattgatggacaaaatcatttcgctaaaccagtcaactttccttaaaggtgggcaattgatggatggagtggtggcggtcaatgag |
115 |
Q |
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| T |
25058036 |
tttaaggttggccttagtgaaggataaaatcatctcgttcaaccagttagctttctttaaaggtaggaaattgataggtggagtagtggcgatcaatgag |
25057937 |
T |
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| Q |
116 |
gttgt |
120 |
Q |
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| T |
25057936 |
gttgt |
25057932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 16703565 - 16703509
Alignment:
| Q |
66 |
ctttccttaaaggtgggcaattgatggatggagtggtggcggtcaatgaggttgtgg |
122 |
Q |
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| T |
16703565 |
ctttccttaaaggtaggcaaatggtggatggagtggtgtcggtcaataagattgtgg |
16703509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 27637803 - 27637766
Alignment:
| Q |
67 |
tttccttaaaggtgggcaattgatggatggagtggtgg |
104 |
Q |
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| T |
27637803 |
tttccttaaaggtatgcaattgatggatggagtggtgg |
27637766 |
T |
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