View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-22 (Length: 127)
Name: Solexa-NF5834-22
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 8e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 4022191 - 4022072
Alignment:
| Q |
8 |
taaataacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatgtggttggtttgcggtagggggaagcttcacttgc |
107 |
Q |
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| T |
4022191 |
taaataacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatgtggttggtttgcggtagggggaagcttcacttgc |
4022092 |
T |
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| Q |
108 |
tgccaaagagtttccttgac |
127 |
Q |
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| T |
4022091 |
tgccaaagagtttccttgac |
4022072 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 4006836 - 4006759
Alignment:
| Q |
12 |
taacaaaaataaaatttgttgaattcttcataagtacagtttttgaaggagacaccaacatgtggttggtttgcggta |
89 |
Q |
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||||||||||||||||| |||||||||||||||||| | ||||| |||||| ||| || ||||||||||||| |||| |
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| T |
4006836 |
taacaaaaataaaatttattgaattcttcataagtagatttttttaaggaggcacaaatctgtggttggtttgtggta |
4006759 |
T |
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