View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-27 (Length: 105)
Name: Solexa-NF5834-27
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-27 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 8e-43; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 8547993 - 8547906
Alignment:
| Q |
18 |
tttatccctctttatattttgttttgaatgacaaatattaataattaattattaaattaatatttgctcatatccggttttgaaccga |
105 |
Q |
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| T |
8547993 |
tttatccctctttatattttgttttgaatgacaaatattaataattaattattaaattaatatttgctcatatccggttttgaaccga |
8547906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 8544711 - 8544627
Alignment:
| Q |
18 |
tttatccctctttatattttgttttgaatgacaaatattaataattaattattaaattaatatttgctcatatccggttttgaac |
102 |
Q |
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| T |
8544711 |
tttatctctctttatagtttgttttgaatgacaaatattagtaattaattattaaattaatatttactcacatccggttttgaac |
8544627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 50983872 - 50983829
Alignment:
| Q |
39 |
ttttgaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
50983872 |
tttttaatgacaaatattaataattagttgttaaattaatattt |
50983829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 51087006 - 51086963
Alignment:
| Q |
39 |
ttttgaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
51087006 |
tttttaatgacaaatattaataattagttgttaaattaatattt |
51086963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 33303607 - 33303643
Alignment:
| Q |
46 |
tgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
33303607 |
tgacaaatattagtaattaattattatattaatattt |
33303643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 29561335 - 29561288
Alignment:
| Q |
41 |
ttgaatgacaaatattaataattaattattaaattaatatttgctcat |
88 |
Q |
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| T |
29561335 |
ttgaatgacaaatattattagttaattattagattaatatttactcat |
29561288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 106228 - 106274
Alignment:
| Q |
34 |
ttttgttttgaatgacaaatattaataattaattattaaattaatat |
80 |
Q |
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| T |
106228 |
ttttttttttaatgacaaatattaacaattaattattagattaatat |
106274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 3294510 - 3294553
Alignment:
| Q |
39 |
ttttgaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
3294510 |
tttttaatgacaaatattagtaattaattgttagattaatattt |
3294553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 28322612 - 28322655
Alignment:
| Q |
39 |
ttttgaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
28322612 |
tttttaataacaaatgttaataattagttattaaattaatattt |
28322655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 10156383 - 10156340
Alignment:
| Q |
39 |
ttttgaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
10156383 |
ttttaaatgacaaatattaatagttaattgttagattaatattt |
10156340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 41714317 - 41714278
Alignment:
| Q |
43 |
gaatgacaaatattaataattaattattaaattaatattt |
82 |
Q |
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| T |
41714317 |
gaatgaaaaatgttagtaattaattattaaattaatattt |
41714278 |
T |
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