View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-29 (Length: 89)
Name: Solexa-NF5834-29
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-29 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24802570 - 24802489
Alignment:
| Q |
8 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttga |
89 |
Q |
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| T |
24802570 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttga |
24802489 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 47476467 - 47476386
Alignment:
| Q |
8 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttga |
89 |
Q |
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| T |
47476467 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttga |
47476386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 47473213 - 47473135
Alignment:
| Q |
8 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaact |
86 |
Q |
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| T |
47473213 |
caaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatgcatgcttttttaaact |
47473135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 47485960 - 47485908
Alignment:
| Q |
8 |
caaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaa |
60 |
Q |
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| T |
47485960 |
caaatcttaatcatgaattaaatattggttgctctgttggcgtattttgtaaa |
47485908 |
T |
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