View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-3 (Length: 219)
Name: Solexa-NF5834-3
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-3 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 32810666 - 32810797
Alignment:
| Q |
86 |
ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaattt |
185 |
Q |
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| T |
32810666 |
ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctatttagtaattt |
32810765 |
T |
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| Q |
186 |
ttatatattagttgttatttgtaattcctatg |
217 |
Q |
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| T |
32810766 |
ttatatattagttattatttgtaattcctatg |
32810797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 7599078 - 7599000
Alignment:
| Q |
131 |
aggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaatttttatatattagttgttatttgtaatt |
211 |
Q |
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| T |
7599078 |
aggatgcttagttgtgtcaataaattattagt-taaatatgttatttagta-tttttatatattagttgttatttgtaatt |
7599000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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