View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-37 (Length: 41)
Name: Solexa-NF5834-37
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-37 |
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Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2777901 - 2777862
Alignment:
| Q |
1 |
acaaacctgcccaattgttctcatcattgcttaagcccaa |
40 |
Q |
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| T |
2777901 |
acaaacctgcccaattgttctcatcattgcttaagcccaa |
2777862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 55320508 - 55320547
Alignment:
| Q |
1 |
acaaacctgcccaattgttctcatcattgcttaagcccaa |
40 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55320508 |
acaaacctgcccaattgttctcatcattgcttaagcccaa |
55320547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 31951609 - 31951647
Alignment:
| Q |
2 |
caaacctgcccaattgttctcatcattgcttaagcccaa |
40 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
31951609 |
caaacctgcccaattgttcacatcattgcttaagcccaa |
31951647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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