View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-5 (Length: 200)
Name: Solexa-NF5834-5
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-5 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 27834848 - 27834661
Alignment:
| Q |
8 |
gtagattgctgcagggttgtgtgacaatcttttgacagcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaat |
107 |
Q |
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| T |
27834848 |
gtagattgctgcagggttgtgtgacaatcttttgacagcaagggactacgagaagccggtgtttgttgcaccatcaatca---atgctatgtggagaaat |
27834752 |
T |
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| Q |
108 |
cctttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaattgacaacaagtttgcagtaaatttagccaaaaaccctatgctac |
200 |
Q |
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| T |
27834751 |
cctttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaattgaca--aagtttgcagtaaatttagccaaaaaccctatgctac |
27834661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 28580326 - 28580255
Alignment:
| Q |
44 |
agcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
115 |
Q |
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| T |
28580326 |
agcatgggactacgagaagccgatgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcac |
28580255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 28585326 - 28585255
Alignment:
| Q |
44 |
agcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
115 |
Q |
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| T |
28585326 |
agcatgggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcac |
28585255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 28404473 - 28404544
Alignment:
| Q |
44 |
agcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
115 |
Q |
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| T |
28404473 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcac |
28404544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 28417908 - 28417979
Alignment:
| Q |
44 |
agcaagggactacgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
115 |
Q |
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| T |
28417908 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcac |
28417979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 28420317 - 28420371
Alignment:
| Q |
58 |
agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt |
112 |
Q |
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| T |
28420317 |
agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt |
28420371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 28581873 - 28581819
Alignment:
| Q |
58 |
agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt |
112 |
Q |
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| T |
28581873 |
agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt |
28581819 |
T |
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