View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-6 (Length: 191)
Name: Solexa-NF5834-6
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-6 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 45225443 - 45225273
Alignment:
| Q |
8 |
gtacccaattatatttgatacatccataattttaagatatttcagaaattgttctgaccccaataacttagagagtggtctgagtgacttgaggtctaaa |
107 |
Q |
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| T |
45225443 |
gtacccaattatatttgatacatccaaaattttaagatatttcagaaattgttcggaccccaataacttagagagtggtctgagtgacttgaggtctaaa |
45225344 |
T |
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| Q |
108 |
cataaattaactgaacaaactaacataattatgaaatataattaaatgtattatgtatgtgcacagcgttc |
178 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45225343 |
cataaattaattgaacaaactaacataattatgaaatataattaaatgtattatgtatgtgcacagcgttc |
45225273 |
T |
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