View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5834-7 (Length: 162)
Name: Solexa-NF5834-7
Description: NF5834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5834-7 |
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| [»] scaffold0022 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 160392 - 160238
Alignment:
| Q |
8 |
attatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattcatgataggaatttccttatccacgagagtaatgtcaa |
107 |
Q |
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| T |
160392 |
attatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattcatgataggaatttccttatccacgagagtaatgtcaa |
160293 |
T |
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| Q |
108 |
atcttttaccactggaatgaatacctacaaattccttaccattttttacagcttc |
162 |
Q |
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| T |
160292 |
atcttttaccactggaatgaatacctacaacttccttaccattttttacagcttc |
160238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 23348459 - 23348611
Alignment:
| Q |
8 |
attatacataacaaaattagaaggaaaacataatcaagataaatatgtacctcaatcctattcatgataggaatttccttatccacgagagtaatgtcaa |
107 |
Q |
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| T |
23348459 |
attatacagaaaaaaattagaaggaaaacagaatcaagataaatatgtacctcaatcccatacatgataggcatttccttatccacgagaataatgtcaa |
23348558 |
T |
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| Q |
108 |
atcttttaccactggaatgaatacctacaaattccttaccattttttacagcttc |
162 |
Q |
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| T |
23348559 |
atctttgactac--caatgattatctacagcttccttgccattttttacagcttc |
23348611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 39635897 - 39636013
Alignment:
| Q |
46 |
ataaatatgtacctcaatcctattcatgataggaatttccttatccacgagagtaatgtcaaatcttttaccactggaatgaatacctacaaattcctta |
145 |
Q |
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|||| ||||||||||||||| |||||||||||| ||||||||||||| |||| |||| |||||||||| |||| || |||| ||| ||||| ||| ||| |
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| T |
39635897 |
ataactatgtacctcaatcccattcatgataggcatttccttatccatgagaataatatcaaatctttgaccattgcaatggatatctacagcttcttta |
39635996 |
T |
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| Q |
146 |
ccattttttacagcttc |
162 |
Q |
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| T |
39635997 |
ccattttttacagcttc |
39636013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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