View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5835-1 (Length: 251)
Name: Solexa-NF5835-1
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-1 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 23235883 - 23235644
Alignment:
| Q |
4 |
atgaacgcgacaaacaacacatccatggttaggatagttgtctttgatctttcttccctttgttccttaatttctaattcaactaaattcttttgcaaga |
103 |
Q |
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| T |
23235883 |
atgaacgcgacaaacaacacatccatggttaggatagttgtctttgatctttcttccctttgttccttaatttctaattcaactaaattcttttgcaaga |
23235784 |
T |
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| Q |
104 |
ctaggttcatttgatagtatctctttcctactttcttttctacccaaattaatttgtcctttgactcccttagatttctgaaatctcatagtccaaaaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23235783 |
ctaggttcatttgatagtatctctttcctactttcttttctacccaaattaatttgtcctttgactcccttagatttctgaaatctcatagtccaaaaca |
23235684 |
T |
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| Q |
204 |
ctagttcgttatgcactgtttggctacgagatatttttct |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23235683 |
ctagttcgttatgcactgtttggctacgagatatttttct |
23235644 |
T |
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