View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5835-10 (Length: 142)
Name: Solexa-NF5835-10
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-10 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 26661330 - 26661466
Alignment:
| Q |
6 |
cacgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctct |
105 |
Q |
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| T |
26661330 |
cacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctct |
26661429 |
T |
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| Q |
106 |
tctacccttgccattcccgctattctttttctatgat |
142 |
Q |
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| T |
26661430 |
tctacccttgccattcccgctattctttttctctgat |
26661466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 8e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 21481251 - 21481384
Alignment:
| Q |
9 |
gttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctcttct |
108 |
Q |
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| T |
21481251 |
gttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgatctccaacaaaatacctcttct |
21481350 |
T |
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| Q |
109 |
acccttgccattcccgctattctttttctatgat |
142 |
Q |
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| T |
21481351 |
acccttgccattcctgctattctttttctctgat |
21481384 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 13331803 - 13331704
Alignment:
| Q |
34 |
attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattcttt |
133 |
Q |
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| T |
13331803 |
attcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattcttt |
13331704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 13342718 - 13342619
Alignment:
| Q |
34 |
attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattcttt |
133 |
Q |
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| T |
13342718 |
attcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattcttt |
13342619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 9462 - 9561
Alignment:
| Q |
29 |
ctttcattcccatgagatagcatgggaaagttttatttccagggaat-aaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgcta |
127 |
Q |
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| T |
9462 |
cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatattttcccttgccattcccgcta |
9561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 5672274 - 5672175
Alignment:
| Q |
34 |
attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattcttt |
133 |
Q |
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| T |
5672274 |
attcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattcttt |
5672175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 22893647 - 22893746
Alignment:
| Q |
29 |
ctttcattcccatgagatagcatgggaaagttttatttccagggaat-aaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgcta |
127 |
Q |
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| T |
22893647 |
cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatattttcccttgccattcccgcta |
22893746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 15762247 - 15762179
Alignment:
| Q |
34 |
attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacc |
102 |
Q |
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| T |
15762247 |
attcccatgaaatagcttgggaaagatttattcccatggaatggaaaccatgatcttcaataaaatacc |
15762179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 10637492 - 10637591
Alignment:
| Q |
29 |
ctttcattcccatgagatagcatgggaaagttttatttccagggaat-aaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgcta |
127 |
Q |
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| T |
10637492 |
cttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatgaacttgaataaaataccatatttgcccttgccattcccgcta |
10637591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 32718102 - 32718003
Alignment:
| Q |
29 |
ctttcattcccatgagatagcatgggaaagttttatttccagggaat-aaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgcta |
127 |
Q |
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|||| ||||||||||||| || ||||||||||||||| ||||| ||| ||| ||||||||| || |||||||| | | |||||||||||||||||| |
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| T |
32718102 |
cttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatgatcttgaataaaataccatatttgcccttgccattcccgcta |
32718003 |
T |
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