View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5835-11 (Length: 141)
Name: Solexa-NF5835-11
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 6e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 30723209 - 30723349
Alignment:
| Q |
1 |
cataaggcaaacgaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgt |
100 |
Q |
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| T |
30723209 |
cataaggcaaacgaggatataatcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgt |
30723308 |
T |
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| Q |
101 |
tatctaaacgatggatagattgttggactttcgtcaccaag |
141 |
Q |
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| T |
30723309 |
tatctaaacgatggatagattgttggactttcgtcaccaag |
30723349 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 30715529 - 30715617
Alignment:
| Q |
16 |
gatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatc |
104 |
Q |
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| T |
30715529 |
gatataatcagcaagctaccctattcacttagatctcgcattctctcatttctcccgacaaaagatgctgctcgtacgagtgtgttatc |
30715617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 11360372 - 11360278
Alignment:
| Q |
13 |
gaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaa |
107 |
Q |
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| T |
11360372 |
gaggatttaatcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
11360278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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