View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5835-12 (Length: 141)
Name: Solexa-NF5835-12
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-12 |
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| [»] chr2 (5 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 4e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 519179 - 519319
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
519179 |
cagagataggaaagctatagggaaagtgatgattgtatttgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcact |
519278 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
519279 |
caaacatgagaggttcactatccaaattgtgagattttttc |
519319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24460055 - 24459915
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
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|
||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24460055 |
cagagataggaaagctataggaaaagtgatgattgtattcgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcact |
24459956 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24459955 |
caaacatgagaggttcactatccaaattgtgagattttttc |
24459915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 27478345 - 27478208
Alignment:
| Q |
4 |
agataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcactcaa |
103 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
27478345 |
agataggaaagctatagggaaagtgatgattgtatttgatgagaaaattacaagatcaaagttgtgatgatctttactaaaaatatgcttgagcactcaa |
27478246 |
T |
|
| Q |
104 |
acatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
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|
| T |
27478245 |
acatgagaggttcactatccaaattgtgagattttttc |
27478208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 10455034 - 10454895
Alignment:
| Q |
2 |
agagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcactc |
101 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10455034 |
agagataggaaaattatagggaaagtgatgattgtattcgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcactc |
10454935 |
T |
|
| Q |
102 |
aaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
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| T |
10454934 |
aaacatgagaggttcactatccaaattgtgagattttttc |
10454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21153364 - 21153509
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21153364 |
cagagataggaaagctatagggaaagtgatgattgtattcgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcact |
21153463 |
T |
|
| Q |
101 |
caa-----acatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
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||| ||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
21153464 |
caaacatgacatgagaggttcacaatccaaattgtgagattttttc |
21153509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 9e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 54410121 - 54410261
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54410121 |
cagagataggaaagctatagggaaagtgatgattgtatttgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcact |
54410220 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
54410221 |
caaacatgagaggttcactatccaaattgtgtgattttttc |
54410261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 55135841 - 55135701
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55135841 |
cagagataggaaagctatagggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
55135742 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||| ||||||| |
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| T |
55135741 |
caaacatgagaagttaaatatccaaattgtgagattttttc |
55135701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32000472 - 32000329
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgat---ctttactaaaactatgcttgagc |
97 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||| |
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|
| T |
32000472 |
cagagataggaaagctatgggaaaagtgatgattgtattcgatgagaaaattacaagatctaggctatgatgatgatcttaactaaaactatgcttgagc |
32000373 |
T |
|
| Q |
98 |
actcaaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32000372 |
cctcaaacatgagaggttcactatccaaattgtgagattttttc |
32000329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 42779716 - 42779622
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttga |
95 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42779716 |
cagagataggaaagctatagggaaggtgatgattgtattcgatgagaaaattacaagatctaagctgtgatgatctttgctaaaactatgcttga |
42779622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 4e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 37623353 - 37623214
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37623353 |
cagagataggaaagctatagggaaagtgatgattgtattagatgagaaaattacaagatctaagatgtgatgatctttactaaaactatgcttgagcact |
37623254 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggtttttt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37623253 |
caaacatgagaggttcactatccaaattgtgagatttttt |
37623214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 47650049 - 47649913
Alignment:
| Q |
3 |
gagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcactca |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
47650049 |
gagataggaaagctatagggaaagtgatgattgtatttgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcactca |
47649950 |
T |
|
| Q |
103 |
aacatgagaggttcactatccaaattgtgaggttttt |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
47649949 |
aacatgagaggttcacaatccaaattgtgagattttt |
47649913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6720298 - 6720437
Alignment:
| Q |
1 |
cagagataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6720298 |
cagagataggaaagctatagggaaagtgatgattgtattcgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcact |
6720397 |
T |
|
| Q |
101 |
caaacatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
6720398 |
taaacaagagaggttc-ctatccaaattgtgagattttttc |
6720437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 5e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 39069717 - 39069854
Alignment:
| Q |
4 |
agataggaaagctataaggaaagtgatgattgtatttgatgagaaaattacaagatctaagctgtgatgatctttactaaaactatgcttgagcactcaa |
103 |
Q |
| |
|
|||||||||||||| | ||||| | || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39069717 |
agataggaaagctacagggaaaataataattgtattcgatgagaaaattacaagatctaagttgtgatgatctttactaaaactatgcttgagcactcaa |
39069816 |
T |
|
| Q |
104 |
acatgagaggttcactatccaaattgtgaggttttttc |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
39069817 |
acatgagaggtttactatccaaattgtgagattttttc |
39069854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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