View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5835-14 (Length: 136)

Name: Solexa-NF5835-14
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5835-14
Solexa-NF5835-14
[»] chr7 (3 HSPs)
chr7 (1-80)||(25974546-25974625)
chr7 (77-136)||(25974659-25974718)
chr7 (11-75)||(25959301-25959363)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 25974546 - 25974625
Alignment:
Q  1 aagaactcaaggaaccaaaaccttgtgaatcaggaaaaatagagtgaaatgagtaactagcatacatgcaagtgacaact 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25974546 aagaactcaaggaaccaaaaccttgtgaatcaggaaaaatagagtgaaatgagtaacaagcatacatgcaagtgacaact 25974625  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 25974659 - 25974718
Alignment:
Q  77 aactagtaaaggaataaaatactcgagaagattctaaaaatatggtcagatagagaagtt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25974659 aactagtaaaggaataaaatactcgagaagattctaaaaatatggtcagatagagaagtt 25974718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 25959301 - 25959363
Alignment:
Q  11 ggaaccaaaaccttgtgaatcaggaaaaatagagtgaaatgagtaactagcatacatgcaagtga 75  Q
    ||||||||| ||||||||||||||  ||| || |||||||||||||| ||| ||| |||||||||    
T  25959301 ggaaccaaagccttgtgaatcagg--aaacagggtgaaatgagtaacaagcctacttgcaagtga 25959363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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