View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5835-15 (Length: 131)
Name: Solexa-NF5835-15
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 18977199 - 18977322
Alignment:
| Q |
8 |
tgaaagaccagcaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctgctatacaatcaccaatcatccacaccta |
107 |
Q |
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| T |
18977199 |
tgaaagaccagcaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctactatacagtcaccaattattcacaccta |
18977298 |
T |
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| Q |
108 |
gaagagtaattggctgctcctttg |
131 |
Q |
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| T |
18977299 |
gaagagtaattggctgctcctttg |
18977322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 7e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 9366343 - 9366220
Alignment:
| Q |
8 |
tgaaagaccagcaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctgctatacaatcaccaatcatccacaccta |
107 |
Q |
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| T |
9366343 |
tgaaagaccagcattgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctactatacaatgaccaattattcacaccca |
9366244 |
T |
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| Q |
108 |
gaagagtaattggctgctcctttg |
131 |
Q |
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| T |
9366243 |
gaagagtaattggctgctcctttg |
9366220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 7e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 24934027 - 24934150
Alignment:
| Q |
8 |
tgaaagaccagcaatgtaatcaaccaccacttattcaagaatcgtttcttctaatcggtctcaaattatctgctatacaatcaccaatcatccacaccta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||| |
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| T |
24934027 |
tgaaagaccagcaatgtaatcaaccaccacttattcaggaatcgtttcttctaatcggtctcaaattatctactataaaatcaccaattattcacaccta |
24934126 |
T |
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| Q |
108 |
gaagagtaattggctgctcctttg |
131 |
Q |
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| T |
24934127 |
gaagagtaattggttgctcctttg |
24934150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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