View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5835-18 (Length: 127)
Name: Solexa-NF5835-18
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-18 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 104; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 25975103 - 25974984
Alignment:
| Q |
8 |
agttctccattcgagaagtgggagaatcccagttccccattcgaggaggagaataccagttcttcatttgaaaaagacgagaataccagttcgccattag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25975103 |
agttctccattcgagaagtgggagaatcccagttctccactcgaggaggagaataccaattcttcatttgaaagagacgagaataccagttcgccattag |
25975004 |
T |
|
| Q |
108 |
aacatcaatacaacatagct |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25975003 |
aacatcaatacaacatagct |
25974984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25975133 - 25975089
Alignment:
| Q |
8 |
agttctccattcgagaagtgggagaatcccagttccccattcgag |
52 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
25975133 |
agttcttcattagagaagtgggagaatcctagttctccattcgag |
25975089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 6512 - 6472
Alignment:
| Q |
86 |
gagaataccagttcgccattagaacatcaatacaacatagc |
126 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6512 |
gagaataccagttctccattagagcatcaatacaacatagc |
6472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 17857258 - 17857181
Alignment:
| Q |
50 |
gaggaggagaataccagttcttcatttgaaaaagacgagaataccagttcgccattagaacatcaatacaacatagct |
127 |
Q |
| |
|
|||||||||||| |||||| | |||||| || | |||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
17857258 |
gaggaggagaattccagttttgtatttgagaagggggagaatactagttttccattagagcatcaatacaacatagct |
17857181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 17858205 - 17858168
Alignment:
| Q |
89 |
aataccagttcgccattagaacatcaatacaacatagc |
126 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
17858205 |
aataccagttctccattagagcatcaatacaacatagc |
17858168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University