View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5835-9 (Length: 142)
Name: Solexa-NF5835-9
Description: NF5835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5835-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 26353139 - 26353260
Alignment:
| Q |
21 |
agatttgaaaatctgtgttttgaat--acaagagaaattaaagctacattaagttactcatgatgaaattaggaaagagttatgcttcacttcagatagg |
118 |
Q |
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| T |
26353139 |
agatttgaaaatctgtgttttgactgtacaagagaaattaaagttacattaagttactcatgatgaaattaggaaagagttatgcttcacttcagatagg |
26353238 |
T |
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| Q |
119 |
aagctcgagtgttaataatata |
140 |
Q |
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| T |
26353239 |
aagctcaagtgttaataatata |
26353260 |
T |
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Target: chr3 (Bit Score: 63; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 26648941 - 26648847
Alignment:
| Q |
48 |
aagagaaattaaagctacattaagttactcatgatgaaattaggaaagagttatgcttcacttcagataggaagctcgagtgttaataatatata |
142 |
Q |
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| T |
26648941 |
aagagaaataaaagctacattaaattactcatgaaaaaattaaggaagagttatgcttcacttcagataggaagctcaagtgttgataatatata |
26648847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 19983454 - 19983418
Alignment:
| Q |
81 |
atgaaattaggaaagagttatgcttcacttcagatag |
117 |
Q |
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| T |
19983454 |
atgaaattaggaaagagctatgcttcacttcagatag |
19983418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 19860411 - 19860352
Alignment:
| Q |
72 |
ttactcatgatgaaattaggaaagagttatgcttcacttcagataggaagctcgagtgtt |
131 |
Q |
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| T |
19860411 |
ttactcatgctaaaattatgaaagagttatgcttcacttcagctagaaggctctagtgtt |
19860352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 1718995 - 1718951
Alignment:
| Q |
67 |
ttaagttactcatgatgaaattaggaaagagttatgcttcacttc |
111 |
Q |
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| T |
1718995 |
ttaacttactcatgatgaaattaggaaagagttatgcttcacttc |
1718951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 22651587 - 22651642
Alignment:
| Q |
50 |
gagaaattaaagctacattaagttactcatgatgaaattaggaaagagttatgctt |
105 |
Q |
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| T |
22651587 |
gagaaatgaaaactacattaaattactcatgataaaatctggaaatagttatgctt |
22651642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 3029625 - 3029570
Alignment:
| Q |
50 |
gagaaattaaagctacattaagttactcatgatgaaattaggaaagagttatgctt |
105 |
Q |
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| T |
3029625 |
gagaaatgaaaactacgttaaattactcatgatgaaatctggaaatagttatgctt |
3029570 |
T |
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