View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5836-1 (Length: 285)

Name: Solexa-NF5836-1
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5836-1
Solexa-NF5836-1
[»] chr4 (5 HSPs)
chr4 (44-284)||(69504-69744)
chr4 (215-269)||(69711-69765)
chr4 (168-227)||(49499445-49499504)
chr4 (215-268)||(40459306-40459359)
chr4 (216-263)||(49499419-49499467)
[»] chr1 (5 HSPs)
chr1 (44-278)||(6836121-6836356)
chr1 (102-262)||(33007455-33007614)
chr1 (215-268)||(338463-338516)
chr1 (216-268)||(43407165-43407217)
chr1 (215-263)||(25921942-25921991)
[»] chr2 (8 HSPs)
chr2 (44-284)||(44788725-44788964)
chr2 (91-187)||(1193862-1193956)
chr2 (96-230)||(29270919-29271049)
chr2 (215-268)||(18292492-18292545)
chr2 (215-268)||(40447836-40447889)
chr2 (216-268)||(34397615-34397667)
chr2 (215-263)||(44788931-44788979)
chr2 (44-78)||(1193829-1193863)
[»] chr3 (6 HSPs)
chr3 (51-269)||(17542461-17542679)
chr3 (67-228)||(9104424-9104584)
chr3 (168-226)||(11937635-11937693)
chr3 (216-268)||(7336492-7336544)
chr3 (168-230)||(16975663-16975725)
chr3 (168-232)||(5004518-5004582)
[»] chr5 (7 HSPs)
chr5 (44-284)||(6308876-6309112)
chr5 (222-284)||(6309086-6309148)
chr5 (215-269)||(6309115-6309169)
chr5 (215-263)||(30910154-30910202)
chr5 (168-227)||(4557762-4557821)
chr5 (216-269)||(25101685-25101738)
chr5 (216-269)||(25160778-25160831)
[»] chr7 (8 HSPs)
chr7 (44-230)||(9993506-9993697)
chr7 (44-230)||(11036147-11036340)
chr7 (69-145)||(3691753-3691829)
chr7 (168-227)||(21491252-21491311)
chr7 (216-268)||(10288589-10288641)
chr7 (215-268)||(12911491-12911544)
chr7 (178-230)||(22078029-22078081)
chr7 (168-227)||(18367086-18367145)
[»] scaffold0013 (2 HSPs)
scaffold0013 (44-263)||(242847-243053)
scaffold0013 (251-284)||(242862-242895)
[»] chr8 (9 HSPs)
chr8 (44-162)||(22816217-22816335)
chr8 (112-227)||(35840596-35840710)
chr8 (44-230)||(40841278-40841461)
chr8 (44-121)||(35839332-35839409)
chr8 (138-269)||(22816081-22816218)
chr8 (215-284)||(44436441-44436510)
chr8 (226-284)||(44436416-44436474)
chr8 (248-284)||(22635809-22635845)
chr8 (236-284)||(22816145-22816193)
[»] chr6 (2 HSPs)
chr6 (168-230)||(32450018-32450080)
chr6 (168-232)||(10751358-10751422)
[»] scaffold1838 (1 HSPs)
scaffold1838 (216-263)||(542-589)
[»] scaffold0413 (1 HSPs)
scaffold0413 (168-232)||(9212-9276)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 44 - 284
Target Start/End: Original strand, 69504 - 69744
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  69504 gtgatgctgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttca 69603  T
Q  144 tggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatatt 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  69604 tggtgatgtgagatatataattattttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatatt 69703  T
Q  244 ttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
     ||||||||||||||||||| ||||||||||||||||||||    
T  69704 ctgtgtggtgccttagtggcgggttacgattatattctgtg 69744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 69711 - 69765
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtta 269  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  69711 gtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggtta 69765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 49499445 - 49499504
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggc 227  Q
    ||||||||| ||||||| ||||||||   ||||||| ||||||| |||||||||||||||    
T  49499445 tttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtggc 49499504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 40459306 - 40459359
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    |||||||||||||||||||  |||||||| | ||| ||||||||||||| ||||    
T  40459306 gtgcctaagtggcgggttataattatattctatgttgtgccttagtggcgggtt 40459359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 49499419 - 49499467
Alignment:
Q  216 tgcctaagtggcgggttactattatattt-tgtgtggtgccttagtggc 263  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||||    
T  49499419 tgccttagtggcgggttaataatatatttctgtgtggtgccttagtggc 49499467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 6836121 - 6836356
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatg-aaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattc 142  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6836121 gtgatgctgagaaggacatgttagattttgattaattaaggaaaaaggaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatattc 6836220  T
Q  143 atggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatat 242  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6836221 atggtgatgtgagatatataaatattttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatat 6836320  T
Q  243 tttgtgtggtgccttagtggcaggttacgattatat 278  Q
    | ||||||||||||||||||| ||||||||||||||    
T  6836321 tctgtgtggtgccttagtggcgggttacgattatat 6836356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 262
Target Start/End: Complemental strand, 33007614 - 33007455
Alignment:
Q  102 aaatgtgagtcttattgaaaatattgtttttgatcgtattcatggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatc 201  Q
    |||||||||| ||||||||||| ||||  |||||  | ||  ||||||| ||||||||||||||||||  |||||||||| |||||||| ||||||||||    
T  33007614 aaatgtgagttttattgaaaatgttgtcattgattatgtttttggtgatatgagatatataattatttg-tgtgtagtgcttttgtggctggtaaatatc 33007516  T
Q  202 atgttgcattgttgtgcctaagtggcgggttactattatattttgtgtggtgccttagtgg 262  Q
    || ||||||||  ||| || ||| ||||||||  |||||||| | ||||||| ||| ||||    
T  33007515 atattgcattggagtgtcttagttgcgggttataattatattctatgtggtgtcttcgtgg 33007455  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 338463 - 338516
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||| ||||    
T  338463 gtgcctaactggcgggttataattatattttgtgtggtgccttagtggcgggtt 338516  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 43407217 - 43407165
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  43407217 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggtt 43407165  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 25921942 - 25921991
Alignment:
Q  215 gtgcctaagtggcggg-ttactattatattttgtgtggtgccttagtggc 263  Q
    |||||| ||||| ||| |||| ||||||||||||||||||||||||||||    
T  25921942 gtgccttagtggtgggattacaattatattttgtgtggtgccttagtggc 25921991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 284
Target Start/End: Original strand, 44788725 - 44788964
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  44788725 gtgatgctgagaaggacatgttagattttgattaattaagaaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttca 44788824  T
Q  144 tggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatatt 243  Q
    ||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44788825 tggtgatgtgagatatataattatttgttgtgtggtg-ctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatatt 44788923  T
Q  244 ttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  44788924 ttgtgtggtgccttagtggagggttacaattatattctgtg 44788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 1193862 - 1193956
Alignment:
Q  91 aaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattcatggtgatgtgagatatataattattttctgtgtagtgcctttgt 187  Q
    ||||||||||||||| ||||  |||||||||| ||||||| ||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  1193862 aaaagagatgaaaatatgaga-ttattgaaaagattgtttatgatcatgttcatggtgatgtgagatatataatta-tttctgtgtggtgcctttgt 1193956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 29270919 - 29271049
Alignment:
Q  96 agatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattcatggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggta 195  Q
    ||||| |||||||||| |||||||||||||||| ||||||| | ||||||  | ||||||||||||  ||| ||||||||  ||||||| |||| ||||     
T  29270919 agatggaaatgtgagttttattgaaaatattgtctttgatcatgttcatgacggtgtgagatatat-gtta-tttctgtg--gtgccttagtggtgggtt 29271014  T
Q  196 aatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    |||||||| |||| |||  ||||||||||| ||||    
T  29271015 aatatcatattgctttggggtgcctaagtgacggg 29271049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 18292545 - 18292492
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18292545 gtgccttagtggcgggttataattatattttgtgtggtgccttagtggcgggtt 18292492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 40447836 - 40447889
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||| ||||    
T  40447836 gtgcctaactggcgggttataattatattttgtgtggtgccttagtggcgggtt 40447889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 34397667 - 34397615
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  34397667 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgggtt 34397615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 44788931 - 44788979
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggc 263  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||||||||    
T  44788931 gtgccttagtggagggttacaattatattctgtgtggtgccttagtggc 44788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 1193829 - 1193863
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaa 78  Q
    ||||||||||||| |||||||||||||||||||||    
T  1193829 gtgatgttgagaaagacatgttagattttgattaa 1193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 17542679 - 17542461
Alignment:
Q  51 tgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattcatggtgat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  17542679 tgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttcatggtgat 17542580  T
Q  151 gtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatattttgtgtg 250  Q
    || ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  17542579 gttagatatataattattttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcgggttactattatattctgtgtg 17542480  T
Q  251 gtgccttagtggcaggtta 269  Q
    ||||||||||||| |||||    
T  17542479 gtgccttagtggcgggtta 17542461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 9104424 - 9104584
Alignment:
Q  67 gattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattcatggtgatgtgagatatataatta 166  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||| | |||||||| | | |||| |||| | ||| |||||||||||||||||||||||    
T  9104424 gattttgattaactaatgaaaatgaaaagagatggaaatgtgagtttgattgaaaagactattttggatcatgttcttggtgatgtgagatatataatta 9104523  T
Q  167 ttttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcg 228  Q
     ||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  9104524 -tttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcg 9104584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 11937693 - 11937635
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtgg 226  Q
    ||||||||| ||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  11937693 tttctgtgtggtgccttagtggcgggataatatcatattgcattgttgtgcctaagtgg 11937635  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 7336544 - 7336492
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  7336544 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggtt 7336492  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 16975663 - 16975725
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    ||||| ||| ||||||| ||||||||  || ||||| ||||||| ||||||||||||||||||    
T  16975663 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 16975725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 5004582 - 5004518
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggtt 232  Q
    ||||| ||| ||||||| ||||||||  || ||||| ||||||| |||||||| |||||||||||    
T  5004582 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 5004518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 44 - 284
Target Start/End: Original strand, 6308876 - 6309112
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||    
T  6308876 gtgatgctgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattg-ttttgatcatgttca 6308974  T
Q  144 tggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatatt 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||||    
T  6308975 tggtgatgtgagatatataattattttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgc---tgtggcgggttactattatatt 6309071  T
Q  244 ttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
     ||||||||| ||||||||| |||||| |||||||||||||    
T  6309072 ctgtgtggtgtcttagtggcgggttactattatattctgtg 6309112  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 6309086 - 6309148
Alignment:
Q  222 agtggcgggttactattatattttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  6309086 agtggcgggttactattatattctgtgtggtgccttagtggcgggttactattatattctgtg 6309148  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 6309115 - 6309169
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtta 269  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  6309115 gtgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggtta 6309169  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 30910154 - 30910202
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggc 263  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||    
T  30910154 gtgcctaagtggcgggttataattatattatgtgtggtgccttagtggc 30910202  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4557821 - 4557762
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggc 227  Q
    ||||||||| ||||||| |||||| |  |||||||| |||||||||||||||||||||||    
T  4557821 tttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggc 4557762  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 25101738 - 25101685
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtta 269  Q
    ||||| ||||||||||| |  ||||||| |||||||||||| ||||||||||||    
T  25101738 tgccttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggtta 25101685  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 25160831 - 25160778
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtta 269  Q
    ||||| ||||||||||| |  ||||||| |||||||||||| ||||||||||||    
T  25160831 tgccttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggtta 25160778  T

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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 9993506 - 9993697
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattc- 142  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||     
T  9993506 gtgatgctgagaaagacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagttttattgaaaagattgtttttgatcatgttca 9993605  T
Q  143 -----atggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
         |||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  9993606 tggtgatggtgatgtgagatatataatta-tttctgtgtggtgcctttgtggtgggtaaatatcatattgcattgttgtgcctaagtggcggg 9993697  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 11036340 - 11036147
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtctt---------attgaaaatattgtttttga 134  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||| |||||||||||    
T  11036340 gtgatgctgagaaagacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagttttcaatgtttcattgaaaagattgtttttga 11036241  T
Q  135 tcgtattcatggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    || | ||||||||||||||||||||||| |||||| |||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  11036240 tcatgttcatggtgatgtgagatatatagttattt-ctgtgtggtgcctt-gtggcgagtaaatatcatattgcattgttgtgcctaagtggcggg 11036147  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 3691753 - 3691829
Alignment:
Q  69 ttttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattcatg 145  Q
    |||| ||||||||||||||  |||||||||||||| ||||||| |||||||||| ||||||||||||| | ||||||    
T  3691753 tttttattaattaaggaaagggaaaagagatgaaagtgtgagttttattgaaaagattgtttttgatcatgttcatg 3691829  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 21491311 - 21491252
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggc 227  Q
    ||||||||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||    
T  21491311 tttctgtgtggtgccttagtggcgggagaatatcatattgcattgttgtgcctaagtggc 21491252  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 10288641 - 10288589
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||| ||||    
T  10288641 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggtt 10288589  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 12911544 - 12911491
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggtt 268  Q
    |||||||||||||||||||  |||||||| |||||||| |||||||||| ||||    
T  12911544 gtgcctaagtggcgggttataattatattctgtgtggtaccttagtggcgggtt 12911491  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 22078029 - 22078081
Alignment:
Q  178 gtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    ||||||| ||||||||  || ||||| ||||||||||||||||||||||||||    
T  22078029 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 22078081  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 18367145 - 18367086
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggc 227  Q
    ||||||||| ||||||| ||||| ||  |||||||| |||||||||||| ||||||||||    
T  18367145 tttctgtgtggtgccttagtggcaggataatatcatattgcattgttgtccctaagtggc 18367086  T

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Target: scaffold0013 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 243053 - 242847
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| | ||      
T  243053 gtgatgctgagaaagacatgttagattttgactaattaaggaaaatgaaaagagatgaaaatgtgagttttattgaaag-attgtttttgatcatgtt-- 242957  T
Q  144 tggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggttactattatatt 243  Q
             |||||||||||||||||  ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  242956 ---------gagatatataattattta-tgtgtggtgcctttgtgacgggtaaatatcatattgcattgttgtgccttagtggcaggttactattatatt 242867  T
Q  244 ttgtgtggtgccttagtggc 263  Q
     ||||||||||||| |||||    
T  242866 ctgtgtggtgccttcgtggc 242847  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 242895 - 242862
Alignment:
Q  251 gtgccttagtggcaggttacgattatattctgtg 284  Q
    |||||||||||||||||||| |||||||||||||    
T  242895 gtgccttagtggcaggttactattatattctgtg 242862  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 22816335 - 22816217
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||    
T  22816335 gtgatgctgagaaggacatgttagattttgattaattaaaaaaaatgaaaagagatgaaaatgtgagtcttattgaaaagattgtttttgatcatgttca 22816236  T
Q  144 tggtgatgtgagatatata 162  Q
    |||||||||||||||||||    
T  22816235 tggtgatgtgagatatata 22816217  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 35840596 - 35840710
Alignment:
Q  112 cttattgaaaatattgtttttgatcgtattcatggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcatt 211  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  35840596 cttattgaaaagattgtttttgatcgtgttcatggtgatgtgagatatataattattt-ctgtgtcgtgcctttgtggcgggtaaatatcatattgcatt 35840694  T
Q  212 gttgtgcctaagtggc 227  Q
    ||||||||||||||||    
T  35840695 gttgtgcctaagtggc 35840710  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 40841461 - 40841278
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaaatattgtttttgatcgtattca 143  Q
    |||||| |||||| |  |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| | | ||||||||| | |||     
T  40841461 gtgatgctgagaaagttatgttagattttgattaactaaggaaaatgaaaagagatgaaaatgtgagtttgattgaaaagactatttttgatcatgttct 40841362  T
Q  144 tggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    |||||||||||||  |||||||| ||||||| |  || |||||||||||||||||||||| ||||||||||||||||| || |||||    
T  40841361 tggtgatgtgaga--tataatta-tttctgtatgctgtctttgtggcgggtaaatatcatattgcattgttgtgcctatgttgcggg 40841278  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 35839332 - 35839409
Alignment:
Q  44 gtgatgttgagaaggacatgttagattttgattaattaaggaaaatgaaaagagatgaaaatgtgagtcttattgaaa 121  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  35839332 gtgatgcttagaaagacatgttagattttgattaattaaggaaaatgaaaagagatggaaatgcgagttttattgaaa 35839409  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 22816218 - 22816081
Alignment:
Q  138 tattcatggtgatgtgagatatataattattttctgtgtagtgcctttgtggcgggtaaatatcatgt----tgcattgttgtgcctaagtg--gcgggt 231  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| | ||| || |    ||   ||| |||||| ||||  ||||||    
T  22816218 tattcatggtgatgtgagatatataattattttctgtgtggtgcctaagtggcgggttactattatattctgtgtggtgtggtgccttagtggcgcgggt 22816119  T
Q  232 tactattatattttgtgtggtgccttagtggcaggtta 269  Q
    ||| |||||||| ||||||||||||||||||| |||||    
T  22816118 tacaattatattatgtgtggtgccttagtggcgggtta 22816081  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 44436441 - 44436510
Alignment:
Q  215 gtgcctaagtggcgggttactattatattttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
    |||||| ||| ||||||||  |||||||| |||||||||||||||| || |||||  |||||||||||||    
T  44436441 gtgccttagttgcgggttataattatattctgtgtggtgccttagttgcgggttataattatattctgtg 44436510  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 44436416 - 44436474
Alignment:
Q  226 gcgggttactattatattttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
    ||||||||  |||||||| |||||||||||||||| || |||||  |||||||||||||    
T  44436416 gcgggttataattatattctgtgtggtgccttagttgcgggttataattatattctgtg 44436474  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 22635845 - 22635809
Alignment:
Q  248 gtggtgccttagtggcaggttacgattatattctgtg 284  Q
    ||||||||||||||||||||| | |||||||||||||    
T  22635845 gtggtgccttagtggcaggttgcaattatattctgtg 22635809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 22816193 - 22816145
Alignment:
Q  236 attatattttgtgtggtgccttagtggcaggttacgattatattctgtg 284  Q
    ||||| || |||||||||||| |||||| |||||| |||||||||||||    
T  22816193 attattttctgtgtggtgcctaagtggcgggttactattatattctgtg 22816145  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 32450080 - 32450018
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcggg 230  Q
    ||||| ||| ||||||| ||||||||  || ||||| ||||||||||||||||||||||||||    
T  32450080 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 32450018  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 10751422 - 10751358
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggtt 232  Q
    ||||| ||| ||||||| ||||||||  || ||||| ||||||| |||||||| |||||||||||    
T  10751422 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 10751358  T

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Target: scaffold1838 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 542 - 589
Alignment:
Q  216 tgcctaagtggcgggttactattatattttgtgtggtgccttagtggc 263  Q
    ||||| ||||||||||||  |||||||| |||||||||||||||||||    
T  542 tgccttagtggcgggttataattatattctgtgtggtgccttagtggc 589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 9212 - 9276
Alignment:
Q  168 tttctgtgtagtgcctttgtggcgggtaaatatcatgttgcattgttgtgcctaagtggcgggtt 232  Q
    ||||| ||| ||||||| ||||||||  || ||||| ||||||| |||||||| |||||||||||    
T  9212 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtt 9276  T

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