View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5836-10 (Length: 146)

Name: Solexa-NF5836-10
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5836-10
Solexa-NF5836-10
[»] chr6 (10 HSPs)
chr6 (10-146)||(5358019-5358155)
chr6 (19-106)||(5429722-5429809)
chr6 (19-116)||(5149596-5149693)
chr6 (61-101)||(5077019-5077059)
chr6 (41-125)||(5139465-5139549)
chr6 (26-96)||(5366639-5366709)
chr6 (19-87)||(5105405-5105471)
chr6 (31-118)||(5422314-5422401)
chr6 (75-116)||(5160448-5160489)
chr6 (31-122)||(5184762-5184853)
[»] chr3 (1 HSPs)
chr3 (19-126)||(48016017-48016124)
[»] chr4 (1 HSPs)
chr4 (21-126)||(4323730-4323835)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 2e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 5358019 - 5358155
Alignment:
Q  10 tcctccttttttgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5358019 tcctccttttttgaaatccttttcaatagactttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacactg 5358118  T
Q  110 gcaaaacaacttggccttgaattatgtgacacttcat 146  Q
    ||||||||||||||||||||||| || ||||||||||    
T  5358119 gcaaaacaacttggccttgaattctgcgacacttcat 5358155  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 5429809 - 5429722
Alignment:
Q  19 tttgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaaca 106  Q
    ||||||||| | ||||| ||||||||||| |||||| | || |||||  ||||||  ||||||| |||||||||||||||||||||||    
T  5429809 tttgaaatcttattcaagagactttgaaaggcttttccaaagtcaccgatttgatgtcgtacttgagatggatctacaccgtagaaca 5429722  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 5149596 - 5149693
Alignment:
Q  19 tttgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaac 116  Q
    |||||||| || ||||| |||||||||||||||||  | |||||||  ||||| | |||||||||| ||||||||||| | || ||||| ||||||||    
T  5149596 tttgaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctacatcataaaacactggcaaaac 5149693  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 5077019 - 5077059
Alignment:
Q  61 tcaccagtttgattacgtacttcagatggatctacaccgta 101  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  5077019 tcaccagtttgatgacgtacttcagatggatctacaccgta 5077059  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 5139465 - 5139549
Alignment:
Q  41 tttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaacaacttggcc 125  Q
    ||||||| |||||| |||| ||||| ||||||| |||||||||||||||||||||  | |||||||| | ||||| || ||||||    
T  5139465 tttgaaaagcttttccgaattcaccggtttgatgacgtacttcagatggatctacgtcatagaacaccgacaaaataatttggcc 5139549  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 5366709 - 5366639
Alignment:
Q  26 tccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctaca 96  Q
    |||| ||||| ||| |||||||||||||| |||| ||||| ||||||| ||| ||||| ||||||||||||    
T  5366709 tcctattcaaaagaatttgaaatgcttttccgaattcaccggtttgatgacggacttccgatggatctaca 5366639  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 5105405 - 5105471
Alignment:
Q  19 tttgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagat 87  Q
    |||||| |||||||||| ||||||||||||||||||  |||  |||| ||||||||| |||||||||||    
T  5105405 tttgaattccttttcaacagactttgaaatgcttttctgaa--caccggtttgattatgtacttcagat 5105471  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 5422401 - 5422314
Alignment:
Q  31 ttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaacaa 118  Q
    ||||| ||| |||||||||||||| | || ||||| ||||||  ||||||||| |||||||||||  || ||||||| |||| |||||    
T  5422401 ttcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaa 5422314  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 5160448 - 5160489
Alignment:
Q  75 acgtacttcagatggatctacaccgtagaacacaggcaaaac 116  Q
    |||||||||||| ||||||||| |||||||||| ||||||||    
T  5160448 acgtacttcagagggatctacatcgtagaacactggcaaaac 5160489  T

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Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 5184762 - 5184853
Alignment:
Q  31 ttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaacaacttg 122  Q
    ||||| ||||||||||| ||| || | ||||| || || |||| |||||||||||| || ||||||  ||||||||| || | |||||||||    
T  5184762 ttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttg 5184853  T

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Target: chr3 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 48016017 - 48016124
Alignment:
Q  19 tttgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaacaa 118  Q
    ||||||||| |  |||| ||| ||||||||||| || ||||||||||| |||||| ||||||||| ||||||||||||  ||| ||||| |||| ||| |    
T  48016017 tttgaaatcttcgtcaaaagattttgaaatgctattccgaactcaccaatttgatgacgtacttccgatggatctacattgtaaaacaccggcagaacca 48016116  T
Q  119 cttggcct 126  Q
    ||||||||    
T  48016117 cttggcct 48016124  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 4323730 - 4323835
Alignment:
Q  21 tgaaatccttttcaatagactttgaaatgctttttcgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacacaggcaaaacaact 120  Q
    |||||| || ||||||||| || |||||| |||  | |||||||||||||||| ||| |||||||| ||||| ||| |||||||||||||||  |||||     
T  4323730 tgaaattctgttcaatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggcagtacaacc 4323829  T
Q  121 tggcct 126  Q
    ||||||    
T  4323830 tggcct 4323835  T

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