View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5836-12 (Length: 145)
Name: Solexa-NF5836-12
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-12 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 4e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 164702 - 164562
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaat |
104 |
Q |
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| T |
164702 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgatcaat |
164603 |
T |
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| Q |
105 |
taaagataaagattctaacctttgcacataggtggcgtgat |
145 |
Q |
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| T |
164602 |
taaagataaagactctaacctttgcacataggtgacgtgat |
164562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 103742 - 103596
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcct------atgttaaaaaggatgtgtaatttcacacattgtg |
98 |
Q |
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| T |
103742 |
caaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacattgta |
103643 |
T |
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| Q |
99 |
ataaattaaagataaagattctaacctttgcacataggtggcgtgat |
145 |
Q |
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| T |
103642 |
aacaattaaagacaatgactctcacctttgcacataggtgacgtgat |
103596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 92566 - 92703
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcctat-gagacataaaatggatcattatccctcctatgttaaaaaggatgtgtaatttcacacattgtgataaa |
103 |
Q |
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| T |
92566 |
caaaggatgaggatagtagatatcttcctgttgag-cataaaatggaacattatccctcatacgttaaagag-atgtgtaaattcatacactgtcatgaa |
92663 |
T |
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| Q |
104 |
ttaaagataaagattctaacctttgcacataggtggcgtg |
143 |
Q |
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| T |
92664 |
ttagagacaaagagcctcacctttgcacataggtggcgtg |
92703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 13052645 - 13052576
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcc--tatga---gacataaaatggatca-ttatccctcctatgt |
68 |
Q |
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| T |
13052645 |
caaaggatgaggatagtaaagatcttcctgtatgagacgacataaaatggatcatttatccctcctatgt |
13052576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 5691977 - 5692005
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcct |
33 |
Q |
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| T |
5691977 |
caaaggatggggatagtaaagatcttcct |
5692005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 5722364 - 5722392
Alignment:
| Q |
5 |
caaaggatggggatagtaaagatcttcct |
33 |
Q |
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| T |
5722364 |
caaaggatggggatagtaaagatcttcct |
5722392 |
T |
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