View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5836-16 (Length: 138)
Name: Solexa-NF5836-16
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 50670925 - 50671058
Alignment:
| Q |
4 |
agtatgttggtggttttattccaacttagtgggggccttagtaaatttagattccatgccgttaggggatccctatgcattcaagagatcagtagtgttt |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50670925 |
agtatgttggtggttt-attccaacttagtgggggccttggtaaatttagattccatgccgttaggggatccctatgcattcaagagatcagtagtgttt |
50671023 |
T |
|
| Q |
104 |
tgattaaaattagagcgttcaaaatatgaacattt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
50671024 |
tgattaaaattagagcgttcaaaatatgaacattt |
50671058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University