View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5836-20 (Length: 128)
Name: Solexa-NF5836-20
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-20 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 38247669 - 38247553
Alignment:
| Q |
8 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatgtaaagttt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247669 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatgtaaagttt |
38247570 |
T |
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| Q |
108 |
tcagataattagttaca |
124 |
Q |
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||||||||||||||||| |
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| T |
38247569 |
tcagataattagttaca |
38247553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 38252699 - 38252580
Alignment:
| Q |
9 |
ggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatgtaaagtttt |
108 |
Q |
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||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||| | || ||||| |||| |
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| T |
38252699 |
ggagtaatggggcttttctacatattggtggcagaacagctcccatatcaacaactcagacttttttctcgttcttcttttgtcgccgacgtaaattttt |
38252600 |
T |
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| Q |
109 |
cagataattagttacatata |
128 |
Q |
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| |||| ||||||||||||| |
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| T |
38252599 |
ctgatagttagttacatata |
38252580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 38213303 - 38213250
Alignment:
| Q |
8 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
61 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38213303 |
tggagtaatgggacttttctacttattggtggcagaacaactcccataccaaca |
38213250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 38237206 - 38237154
Alignment:
| Q |
9 |
ggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38237206 |
ggagtaatgggacttttctacctattggtggcagaacagctcccataccaaca |
38237154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 38219702 - 38219656
Alignment:
| Q |
7 |
atggagtaatgggacttttctacctattggtggcagaacaactccca |
53 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38219702 |
atggtgtaatgggacttttctacctattggtggcagaacaactccca |
38219656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 38225788 - 38225743
Alignment:
| Q |
8 |
tggagtaatgggacttttctacctattggtggcagaacaactccca |
53 |
Q |
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|||||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
38225788 |
tggagtaatgggacttttctacttgttggtggcagaacagctccca |
38225743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 38242403 - 38242369
Alignment:
| Q |
12 |
gtaatgggacttttctacctattggtggcagaaca |
46 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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|
| T |
38242403 |
gtaatgggatttttctacctattggtggcagaaca |
38242369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 17453615 - 17453562
Alignment:
| Q |
8 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17453615 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
17453562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 17432729 - 17432676
Alignment:
| Q |
8 |
tggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
61 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
17432729 |
tggagtaatgggacttttctacctattggtggcagaagaacttccataccaaca |
17432676 |
T |
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