View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5836-21 (Length: 127)
Name: Solexa-NF5836-21
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 19374725 - 19374606
Alignment:
| Q |
8 |
gttgtaaatgatgtgaatttgaatttttgaactatgttgtaaatgatgtgaataagtgtaagttgttaagcaatttgcatgtggtggtgttgggtaattg |
107 |
Q |
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| T |
19374725 |
gttgtaaatgatgtgaatttgaatttttgaactatgttgtaaatgatgtgaataagtgtaagttgttaagcaatttgcatgtggtggtgttgggcaattg |
19374626 |
T |
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| Q |
108 |
aatgaatgtcatagtgcttt |
127 |
Q |
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| T |
19374625 |
aatgaatgtcatagtgcttt |
19374606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 19374745 - 19374708
Alignment:
| Q |
23 |
aatttgaatttttgaactatgttgtaaatgatgtgaat |
60 |
Q |
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| T |
19374745 |
aatttgaatttttgaactatgttgtaaatgatgtgaat |
19374708 |
T |
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