View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5836-3 (Length: 239)
Name: Solexa-NF5836-3
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-3 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 28169244 - 28169013
Alignment:
| Q |
7 |
aattttaaaacctgaacaaagaaagaataataaagaagggattacatctgcgatgaagaatttcattgaatggataactatgatgaaacttacataaatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28169244 |
aattttaaaacctgaacaaagaaagaataataaagaagggattacatctgcgatgaagaatttcattgaatggataactatggtgaaacttacataaatt |
28169145 |
T |
|
| Q |
107 |
tgtttgctggacagacaattcacttggtatggaattgaatcatcaatttggttagatcgagtgtttgtagaagatggttggcttagacatttcaaggatt |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28169144 |
tgtttgctgga-agacaattcacttggtatggatttgaatcatcaatttggttagatcaagtgtttgtagaagatggttggcttagacatttcaaggatt |
28169046 |
T |
|
| Q |
207 |
taaagatacaggtaatagggacatcactctctg |
239 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
28169045 |
taaagatacatgtaatagggacatcactctctg |
28169013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 8558715 - 8558671
Alignment:
| Q |
7 |
aattttaaaacctgaacaaagaaagaataataaagaagggattac |
51 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
8558715 |
aattttaaaacccgaacaaagaaagaataataatgaagggattac |
8558671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University