View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5836-7 (Length: 175)
Name: Solexa-NF5836-7
Description: NF5836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5836-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 2e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 38246930 - 38247104
Alignment:
| Q |
1 |
acacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttc |
100 |
Q |
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| T |
38246930 |
acacacgccacaagagattttttatcttggggggagatttaatgttccaaattaagtcccaacgaccagatttatgcaaatgaatattgtcaacaatttc |
38247029 |
T |
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| Q |
101 |
attcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcaca |
175 |
Q |
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| T |
38247030 |
attcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcaca |
38247104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 12223845 - 12223729
Alignment:
| Q |
32 |
gggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgtaagcactgcgaacg |
131 |
Q |
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| T |
12223845 |
gggagctttcatgttccaaattaaatcccaacgacccgatttatgcaaatgagtattgtcaacaatttcattcatacatattttgtaagcactacaaaca |
12223746 |
T |
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| Q |
132 |
aaatacctaccattttt |
148 |
Q |
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| T |
12223745 |
gaatacctaccattttt |
12223729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12226012 - 12225885
Alignment:
| Q |
1 |
acacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttc |
100 |
Q |
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|||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| | | ||||| ||||||| ||||||||| |||||| |
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| T |
12226012 |
acacacaccacaagagaatttcgatcttagggggagctttgatgttccaaattaaatcccaacgatccagtttatccaaatgagtattgtcaacaatttc |
12225913 |
T |
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| Q |
101 |
attcatacatattctgtaagcactgcga |
128 |
Q |
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| T |
12225912 |
gttcatacatattctgtaagcactgcga |
12225885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 9170934 - 9171064
Alignment:
| Q |
18 |
ttttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgt |
117 |
Q |
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|||||||||||||||| | ||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||||||| |||||| |||||||||||| ||| |
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| T |
9170934 |
ttttttatcttgggggaaactttaatgttccaaattaaatcccaacaacccgatttatgcaagtgagtattgtcaacaatttctttcatacatattatgt |
9171033 |
T |
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| Q |
118 |
aagcactgcgaacgaaatacctaccattttt |
148 |
Q |
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| T |
9171034 |
aagcattacgaacggaatacataccattttt |
9171064 |
T |
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