View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5837-1 (Length: 299)

Name: Solexa-NF5837-1
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5837-1
Solexa-NF5837-1
[»] chr1 (1 HSPs)
chr1 (19-97)||(43659730-43659808)
[»] chr2 (3 HSPs)
chr2 (119-247)||(27867449-27867577)
chr2 (125-196)||(9501493-9501565)
chr2 (120-251)||(28279375-28279508)
[»] chr8 (1 HSPs)
chr8 (120-262)||(16053400-16053543)
[»] chr4 (2 HSPs)
chr4 (119-247)||(12023765-12023889)
chr4 (130-247)||(12032170-12032283)
[»] chr3 (3 HSPs)
chr3 (148-195)||(8403427-8403474)
chr3 (125-234)||(11520034-11520146)
chr3 (120-196)||(14426582-14426659)
[»] chr5 (3 HSPs)
chr5 (156-234)||(17026524-17026602)
chr5 (156-206)||(23177119-23177169)
chr5 (127-251)||(24840659-24840785)
[»] chr6 (1 HSPs)
chr6 (129-250)||(18388513-18388637)
[»] chr7 (2 HSPs)
chr7 (131-247)||(25705391-25705506)
chr7 (171-247)||(20146439-20146515)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 43659808 - 43659730
Alignment:
Q  19 gatcaccattaaagtggaatacaattgagttaattcagaactaatcagtttctcaatattcatgcatcaaattcaatag 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43659808 gatcaccattaaagtggaatacaattgagttaattcagaactaatcagtttctcaatattcatgcatcaaattcaatag 43659730  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 27867449 - 27867577
Alignment:
Q  119 aataaatcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaatttt 218  Q
    ||||||||| ||| ||||||||||||||  |||||||||||||| | |||||||||||||| |||| |||||||||||  |||||||| ||  ||||||     
T  27867449 aataaatcaaggtagcttgaaaaaggcttgaggtaccaaaacaagtgtctcgtgtgtatgataataaaaccgatagtccgtagagaacgacataaatttc 27867548  T
Q  219 gagcaaaaataacaattcacatggaacac 247  Q
    ||| ||||||| |||| ||||||||||||    
T  27867549 gaggaaaaatagcaatccacatggaacac 27867577  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 9501565 - 9501493
Alignment:
Q  125 tcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgtgtatgacaatataaccgatagtc 196  Q
    |||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  9501565 tcagggtggcttgaaaaaggctctagttaccaaaaacaaatgtctcgtgtgtatgacaatacaactgatagtc 9501493  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 28279375 - 28279508
Alignment:
Q  120 ataaatcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaatttt 218  Q
    |||| ||||| |||||||||||| ||| ||  || ||| | |||||| |||||||||||||||||| ||||||||||| |||||||||  || ||||||     
T  28279375 ataattcaggatggcttgaaaaatgctctatttatcaatatcaaatacctcgtgtgtatgacaatacaaccgatagtccatagagaacttccgaaatttc 28279474  T
Q  219 gagcaaaaataacaattc-acatggaacactcat 251  Q
    |||||||| ||  ||| | |||||||||||||||    
T  28279475 gagcaaaagtagaaatccaacatggaacactcat 28279508  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 16053400 - 16053543
Alignment:
Q  120 ataaatcagggtggcttgaaaaaggctataggtaccaaaacaaatat--ctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattt 217  Q
    |||| ||||||||||||||||| |||  ||| |||||||| | | ||  |||||||||||||||||||||| |||||||||||||||||  || ||||||    
T  16053400 ataattcagggtggcttgaaaa-ggccctagttaccaaaaaataaatgcctcgtgtgtatgacaatataactgatagtctatagagaacgtccgaaattt 16053498  T
Q  218 tgagcaaaaataacaattc-acatggaacactcatgaatgaaaaaa 262  Q
     |||||||||||||||| | ||||||||||||||| ||||||||||    
T  16053499 cgagcaaaaataacaatccaacatggaacactcat-aatgaaaaaa 16053543  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 12023765 - 12023889
Alignment:
Q  119 aataaatcagggtggcttgaaaaaggctataggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaatttt 218  Q
    ||||| || |||||||||||||||||||  | |||||||||||| | |||| ||||||||| |||||||  |||||||  |||||||||||| |||        
T  12023765 aataattccgggtggcttgaaaaaggctcaaagtaccaaaacaagtgtctcatgtgtatgataatataattgatagtccgtagagaacaacctaaa---- 12023860  T
Q  219 gagcaaaaataacaattcacatggaacac 247  Q
    ||| ||||||| |||| ||||||||||||    
T  12023861 gaggaaaaatagcaatccacatggaacac 12023889  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 12032283 - 12032170
Alignment:
Q  130 gtggcttgaaaaaggctataggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaata 229  Q
    |||||||||||||| ||  ||||| |||||||| | |||| ||||||||| |||||||| |||||||  |||||||||||| |||    ||| |||||||    
T  12032283 gtggcttgaaaaagactcaaggtatcaaaacaagtgtctcatgtgtatgataatataactgatagtccgtagagaacaacctaaa----gaggaaaaata 12032188  T
Q  230 acaattcacatggaacac 247  Q
     |||| ||||||||||||    
T  12032187 tcaatccacatggaacac 12032170  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 8403427 - 8403474
Alignment:
Q  148 taggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagt 195  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8403427 taggtaccaaaacaaatttctcgtgtgtatgacaatataaccgatagt 8403474  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 11520146 - 11520034
Alignment:
Q  125 tcagggtggcttgaaaaa--ggctataggtaccaaaa-caaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgag 221  Q
    ||||||||||||||||||  |||| |||||||||||| ||||| ||||||||||||||||||| |||| ||||||| ||  |||  ||| ||||||  ||    
T  11520146 tcagggtggcttgaaaaaaaggctctaggtaccaaaaacaaatgtctcgtgtgtatgacaatacaaccaatagtctgtaacgaatgaccgaaatttcaag 11520047  T
Q  222 caaaaataacaat 234  Q
    |||||||| ||||    
T  11520046 caaaaatagcaat 11520034  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 14426659 - 14426582
Alignment:
Q  120 ataaatcagggtggcttgaaaaaggctataggtaccaaaa-caaatatctcgtgtgtatgacaatataaccgatagtc 196  Q
    |||| ||||||||| |||||||||||| ||| |||||||| |||||  ||| |||||||||||||||||| |||||||    
T  14426659 ataattcagggtggattgaaaaaggctctagttaccaaaaacaaatgcctcatgtgtatgacaatataactgatagtc 14426582  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 17026602 - 17026524
Alignment:
Q  156 aaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaat 234  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||  |||| |||||||||| ||||||||||| ||||    
T  17026602 aaaacaaatgtctcgtgtgtatgacaatacaaacgatagtctgtaatgaacgaccaaaatttcgagcaaaaatagcaat 17026524  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 23177119 - 23177169
Alignment:
Q  156 aaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaac 206  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||||||    
T  23177119 aaaacaaatatctcgtgtgtatgacaatacaactgatagtccgtagagaac 23177169  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 24840785 - 24840659
Alignment:
Q  127 agggtggcttgaaaaaggctataggta-ccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaa 225  Q
    |||||||||||||||||||| ||| ||   |||||||||  ||| ||| ||||| |||| ||| ||||||||||| ||||  ||| |||||| | | |||    
T  24840785 agggtggcttgaaaaaggctctagttataaaaaacaaatgcctcatgtatatgaaaatacaactgatagtctataaagaatgaccgaaatttcgtgtaaa 24840686  T
Q  226 aataacaattc-acatggaacactcat 251  Q
    |||| |||| | |||||||||||||||    
T  24840685 aatagcaatccaacatggaacactcat 24840659  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 18388637 - 18388513
Alignment:
Q  129 ggtggcttgaaaaaggctataggtacc--aaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaa 226  Q
    |||||||| ||||||||| |||||||   |||||||||   |||||| |||||||||| ||||||||||   |||||||||||||||||||  |||||||    
T  18388637 ggtggcttcaaaaaggctctaggtacggaaaaacaaatgcttcgtgtatatgacaataaaaccgatagttcgtagagaacaaccaaaatttcaagcaaaa 18388538  T
Q  227 ataacaattc-acatggaacactca 250  Q
    ||| |||| | |||| |||||||||    
T  18388537 atagcaatccaacattgaacactca 18388513  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 25705506 - 25705391
Alignment:
Q  131 tggcttgaaaaaggctataggtaccaaaacaaatatctcgtgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataa 230  Q
    |||||| ||||||||   ||||||||||  |||| ||||||||||||||  ||| |||| ||||||| || |||||||||| | |||  |||||||||||    
T  25705506 tggcttaaaaaaggcacaaggtaccaaag-aaatgtctcgtgtgtatgatgatacaaccaatagtctgtatagaacaaccacactttgtagcaaaaataa 25705408  T
Q  231 caattcacatggaacac 247  Q
    ||||  |||| ||||||    
T  25705407 caatcaacatagaacac 25705391  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 20146515 - 20146439
Alignment:
Q  171 tgtgtatgacaatataaccgatagtctatagagaacaaccaaaattttgagcaaaaataacaattcacatggaacac 247  Q
    ||||||||| |||| ||||||||||| ||  ||||  |||| ||||| |||| ||| ||||||| ||||||||||||    
T  20146515 tgtgtatgataatacaaccgatagtccatgaagaatgaccacaatttcgagctaaactaacaatccacatggaacac 20146439  T

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