View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5837-4 (Length: 144)

Name: Solexa-NF5837-4
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5837-4
Solexa-NF5837-4
[»] chr7 (17 HSPs)
chr7 (5-112)||(2341846-2341953)
chr7 (104-144)||(2341620-2341660)
chr7 (31-81)||(33072109-33072159)
chr7 (26-91)||(25709394-25709459)
chr7 (31-91)||(33343106-33343166)
chr7 (31-81)||(34270389-34270439)
chr7 (31-81)||(46290138-46290188)
chr7 (25-81)||(22334015-22334071)
chr7 (30-78)||(29692539-29692587)
chr7 (32-87)||(26050462-26050517)
chr7 (32-87)||(26059821-26059876)
chr7 (31-81)||(8420833-8420883)
chr7 (31-81)||(39757110-39757160)
chr7 (30-91)||(29398133-29398194)
chr7 (31-91)||(4969891-4969951)
chr7 (30-94)||(26300686-26300750)
chr7 (31-74)||(32117949-32117992)
[»] chr8 (13 HSPs)
chr8 (31-89)||(6818137-6818195)
chr8 (31-94)||(3306055-3306118)
chr8 (31-81)||(2161515-2161565)
chr8 (22-81)||(26682196-26682255)
chr8 (31-77)||(5573418-5573464)
chr8 (31-81)||(26363990-26364040)
chr8 (31-79)||(13496709-13496757)
chr8 (31-91)||(14961663-14961723)
chr8 (25-77)||(22838357-22838409)
chr8 (31-91)||(28014858-28014918)
chr8 (30-78)||(38212943-38212991)
chr8 (33-81)||(44091446-44091494)
chr8 (31-74)||(8284568-8284611)
[»] chr1 (17 HSPs)
chr1 (30-94)||(29635747-29635811)
chr1 (26-91)||(47355373-47355438)
chr1 (31-94)||(23576414-23576477)
chr1 (31-81)||(1502720-1502770)
chr1 (32-81)||(9516709-9516758)
chr1 (30-96)||(1366160-1366226)
chr1 (24-81)||(10896481-10896538)
chr1 (32-81)||(13241885-13241934)
chr1 (32-81)||(35438843-35438892)
chr1 (31-63)||(19066644-19066676)
chr1 (31-63)||(19114534-19114566)
chr1 (31-91)||(25465276-25465336)
chr1 (30-78)||(51920430-51920478)
chr1 (31-78)||(5879103-5879150)
chr1 (31-78)||(6180317-6180364)
chr1 (30-77)||(23591830-23591877)
chr1 (31-78)||(35512856-35512903)
[»] chr5 (15 HSPs)
chr5 (26-96)||(15240945-15241015)
chr5 (32-96)||(15820339-15820403)
chr5 (30-81)||(35469682-35469733)
chr5 (31-81)||(30839909-30839959)
chr5 (31-81)||(36597707-36597757)
chr5 (25-81)||(31365944-31366000)
chr5 (31-94)||(23995416-23995479)
chr5 (30-81)||(32019983-32020034)
chr5 (34-81)||(40513079-40513126)
chr5 (31-81)||(6863684-6863734)
chr5 (32-81)||(15191001-15191050)
chr5 (31-91)||(3398338-3398398)
chr5 (33-81)||(30893757-30893805)
chr5 (31-74)||(13515926-13515969)
chr5 (27-94)||(40980488-40980555)
[»] chr4 (14 HSPs)
chr4 (31-81)||(9759142-9759192)
chr4 (31-81)||(39876958-39877008)
chr4 (31-81)||(51691469-51691519)
chr4 (32-91)||(52391416-52391475)
chr4 (31-81)||(7349816-7349866)
chr4 (31-81)||(40049686-40049736)
chr4 (31-81)||(50352430-50352480)
chr4 (31-91)||(18882267-18882327)
chr4 (31-63)||(25840939-25840971)
chr4 (30-82)||(32279198-32279250)
chr4 (31-91)||(49181190-49181250)
chr4 (31-74)||(8736811-8736854)
chr4 (31-94)||(19468309-19468372)
chr4 (30-81)||(40682560-40682610)
[»] chr3 (10 HSPs)
chr3 (20-81)||(12515463-12515524)
chr3 (31-91)||(10307884-10307944)
chr3 (32-91)||(1569191-1569250)
chr3 (31-81)||(2571396-2571446)
chr3 (25-78)||(40930182-40930235)
chr3 (26-94)||(2566597-2566665)
chr3 (32-89)||(37055367-37055424)
chr3 (32-77)||(42180184-42180229)
chr3 (30-82)||(15862901-15862953)
chr3 (31-91)||(50204521-50204581)
[»] scaffold0111 (1 HSPs)
scaffold0111 (30-94)||(41097-41161)
[»] chr6 (11 HSPs)
chr6 (31-87)||(29863302-29863358)
chr6 (31-81)||(14228126-14228176)
chr6 (31-81)||(17552587-17552637)
chr6 (31-81)||(28943769-28943819)
chr6 (32-91)||(8977467-8977526)
chr6 (31-77)||(2830681-2830727)
chr6 (31-81)||(3853071-3853121)
chr6 (31-81)||(31169763-31169813)
chr6 (31-76)||(27819627-27819672)
chr6 (31-91)||(34692472-34692532)
chr6 (31-74)||(32614944-32614987)
[»] chr2 (15 HSPs)
chr2 (31-81)||(24729577-24729627)
chr2 (31-81)||(38248420-38248470)
chr2 (31-87)||(36731302-36731358)
chr2 (30-89)||(23932685-23932744)
chr2 (33-96)||(26003348-26003411)
chr2 (31-81)||(5583558-5583608)
chr2 (31-81)||(7757786-7757836)
chr2 (31-81)||(17265532-17265582)
chr2 (31-81)||(29157829-29157879)
chr2 (21-78)||(8065254-8065311)
chr2 (32-81)||(34213950-34213999)
chr2 (18-90)||(6765119-6765191)
chr2 (48-96)||(17234955-17235003)
chr2 (31-94)||(4576326-4576389)
chr2 (31-94)||(43806475-43806538)
[»] scaffold0018 (1 HSPs)
scaffold0018 (31-80)||(182171-182220)
[»] scaffold0229 (1 HSPs)
scaffold0229 (30-96)||(24526-24592)
[»] scaffold0011 (1 HSPs)
scaffold0011 (31-81)||(13213-13263)
[»] scaffold0618 (1 HSPs)
scaffold0618 (33-81)||(8416-8464)
[»] scaffold0149 (1 HSPs)
scaffold0149 (32-76)||(22597-22641)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 1e-42; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 2341953 - 2341846
Alignment:
Q  5 atgaagagactgataatatttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaattggtgggtt 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||| ||    
T  2341953 atgaagaggctgataatatttaaaaagtttttctatcatgtataaatttgcacatgttaaaaaatttaaaatagtaaaattgtattgaaattggtggatt 2341854  T
Q  105 ttatataa 112  Q
    ||||||||    
T  2341853 ttatataa 2341846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 2341660 - 2341620
Alignment:
Q  104 tttatataaatatagataatcgaatgtaattttgattttca 144  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2341660 tttatataaatatagataatcgaatgtaattttgattttca 2341620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 33072159 - 33072109
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  33072159 gtttttctatcatgtgcaaatttgtacatgttaagaaatttaaaatagtaa 33072109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 25709394 - 25709459
Alignment:
Q  26 aaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    ||||||||||||||||||||  ||||||| |||||||| ||| |||||||||||||  ||||||||    
T  25709394 aaaaagtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagtaactttgtattg 25709459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 33343166 - 33343106
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||  ||||||||    
T  33343166 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgtattg 33343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 34270439 - 34270389
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  34270439 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 34270389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 46290188 - 46290138
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  46290188 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 46290138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 22334015 - 22334071
Alignment:
Q  25 taaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||| |||||||  |||||||||||||||| ||| |||||| ||||||    
T  22334015 taaaaagtttttcaatcatgtgcaaatttgtacatgttaagaagtttaaagtagtaa 22334071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 29692539 - 29692587
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||||||    
T  29692539 agtttttctatcatgtgcaaatttgtacatgttaagaagtttaaaatag 29692587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 26050462 - 26050517
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgt 87  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||||| ||||    
T  26050462 tttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatggtaaatttgt 26050517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 26059821 - 26059876
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgt 87  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||||| ||||    
T  26059821 tttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatggtaaatttgt 26059876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 8420833 - 8420883
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||| | ||||||||||||||||  ||||||||||| ||||    
T  8420833 gtttttctatcatgaacaaatttgtacatgttaaaaaatttaaaatggtaa 8420883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 39757110 - 39757160
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||||||    
T  39757110 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagtaa 39757160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29398133 - 29398194
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    ||||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  29398133 agtttttctatcatgttcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 29398194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 4969951 - 4969891
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  4969951 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 4969891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 26300750 - 26300686
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||| |||||||| ||||||| ||||||||  || |||||||||||||  ||| |||||||    
T  26300750 agtttttccatcatgtacaaatttgcacatgttaaaaagtttaaaatagtaactttgaattgaaa 26300686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 32117992 - 32117949
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaa 74  Q
    |||||||||||||||  ||||||| |||||||| ||||||||||    
T  32117992 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaa 32117949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 8e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 6818195 - 6818137
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtat 89  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||    
T  6818195 gtttttctatcatgtgcaaatttgtacatgttaagaagtttaaaatagtaaaattgtat 6818137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 3306055 - 3306118
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||  ||| |||||||    
T  3306055 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattgaaa 3306118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 2161565 - 2161515
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  2161565 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 2161515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 26682255 - 26682196
Alignment:
Q  22 atttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||  |||||||||||||||  ||||||| |||||||| |||||||||| ||||||    
T  26682255 atttaaagggtttttctatcatgtgcaaatttgcacatgttaagaaatttaaagtagtaa 26682196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 5573464 - 5573418
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaata 77  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||    
T  5573464 gtttttctatcatgtgcaaatttgtacatgttaagaagtttaaaata 5573418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 26363990 - 26364040
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  |||||||  ||||||| |||||||||||||||||    
T  26363990 gtttttctatcatgtgcaaatttgcgcatgttaagaaatttaaaatagtaa 26364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 13496709 - 13496757
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagt 79  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||||    
T  13496709 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagt 13496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 14961663 - 14961723
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| ||||| || ||| |||||||||||||  ||||||||    
T  14961663 gtttttctatcatgtgcaaatttgcacatgctaagaagtttaaaatagtaattttgtattg 14961723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 22838409 - 22838357
Alignment:
Q  25 taaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaata 77  Q
    ||||| |||||||||||||||  ||||||| |||||||| ||| |||||||||    
T  22838409 taaaatgtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaata 22838357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 28014858 - 28014918
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  28014858 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 28014918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 38212943 - 38212991
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    ||||||||||||||||  ||||||| |||||||| ||| ||||||||||    
T  38212943 agtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatag 38212991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 44091494 - 44091446
Alignment:
Q  33 ttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||| |||||||| | |||||| |||||||||| ||||||    
T  44091494 ttttctatcatgtgtaaatttgcatatgttaagaaatttaaagtagtaa 44091446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 8284568 - 8284611
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaa 74  Q
    |||||||||||||||  |||||||||||||||| ||| ||||||    
T  8284568 gtttttctatcatgtgcaaatttgtacatgttaagaagtttaaa 8284611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 29635747 - 29635811
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||  || ||||||||    
T  29635747 agtttttctatcatttataaatttgtacatgttaaaaaatttaaaatagtaactttatattgaaa 29635811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 47355373 - 47355438
Alignment:
Q  26 aaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||| ||||||||    
T  47355373 aaaatgtttttctatcacgtataaatttacacatgttaagaaatttaaaataataaatttgtattg 47355438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 23576414 - 23576477
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||  ||| |||||||    
T  23576414 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattgaaa 23576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 1502720 - 1502770
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  1502720 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 1502770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 9516758 - 9516709
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||| |||||||| |||||||| |||||||||||| ||||    
T  9516758 tttttctatcatgtgtaaatttgcacatgttaagaaatttaaaatggtaa 9516709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 1366226 - 1366160
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    ||||||||||||||||  ||||||  |||||| | |||||||||||||||||  |||||||| ||||    
T  1366226 agtttttctatcatgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaatt 1366160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 10896538 - 10896481
Alignment:
Q  24 ttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||| ||||||||||||||| |||| ||| |||||||| ||| |||||| ||||||    
T  10896538 ttaaaaggtttttctatcatgtgtaaaattgcacatgttaagaagtttaaagtagtaa 10896481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 13241934 - 13241885
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||||    
T  13241934 tttttctatcatgtgaaaatttgcacatgttaagaaatttaaaatggtaa 13241885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 35438892 - 35438843
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||||    
T  35438892 tttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatggtaa 35438843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 19066676 - 19066644
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgtta 63  Q
    |||||||||||||||||||||||| ||||||||    
T  19066676 gtttttctatcatgtataaatttgcacatgtta 19066644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 19114566 - 19114534
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgtta 63  Q
    |||||||||||||||||||||||| ||||||||    
T  19114566 gtttttctatcatgtataaatttgcacatgtta 19114534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 25465336 - 25465276
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| || ||||||||||| ||| ||||    
T  25465336 gtttttctatcatgtgcaaatttgcacatgttaagaagttcaaaatagtaaatttgcattg 25465276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 51920430 - 51920478
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    ||||||||||||||||  ||||||| ||||||||  |||||||||||||    
T  51920430 agtttttctatcatgtgcaaatttgcacatgttaataaatttaaaatag 51920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 5879103 - 5879150
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    ||||||||||||||| |||||||| |||||||| ||| ||| ||||||    
T  5879103 gtttttctatcatgtgtaaatttgcacatgttaagaagtttgaaatag 5879150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 6180364 - 6180317
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||||||||    
T  6180364 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatag 6180317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 23591877 - 23591830
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaata 77  Q
    ||||||||||||||||  ||||||| |||||||| ||||||| |||||    
T  23591877 agtttttctatcatgtgcaaatttgcacatgttaagaaattttaaata 23591830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 35512903 - 35512856
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    |||||||||||||||  ||||||| |||||||| ||| ||||||||||    
T  35512903 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatag 35512856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 15240945 - 15241015
Alignment:
Q  26 aaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    ||||||||||||||||||||  ||||||||||||||||  || || |||||| |||| |||||||||||||    
T  15240945 aaaaagtttttctatcatgtgcaaatttgtacatgttaaaaagttcaaaatattaaatttgtattgaaatt 15241015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 15820403 - 15820339
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    |||||||||||||| |||||||  |||||| | |||||| ||||||||||| |||||||||||||    
T  15820403 tttttctatcatgtttaaatttacacatgtcaagaaattcaaaatagtaaatttgtattgaaatt 15820339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 35469733 - 35469682
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  35469733 agtttttctatcatgtgtaaatttgcacatgttaaaaaatttaaaatagtaa 35469682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30839959 - 30839909
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  30839959 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 30839909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 36597757 - 36597707
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  36597757 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 36597707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 31365944 - 31366000
Alignment:
Q  25 taaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||| ||||||||||||||||  |||||||||||||||| ||| |||||| ||||||    
T  31365944 taaagagtttttctatcatgtgcaaatttgtacatgttaagaagtttaaattagtaa 31366000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 23995416 - 23995479
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||| ||||  |||||||||||||||| ||| |||||||||||||  || ||||||||    
T  23995416 gtttttctattatgtgcaaatttgtacatgttaagaagtttaaaatagtaattttatattgaaa 23995479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 32019983 - 32020034
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||||  ||||||| |||||||| |||||||||||| ||||    
T  32019983 agtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatggtaa 32020034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 40513126 - 40513079
Alignment:
Q  34 tttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  40513126 tttctatcatgtacaaatttgcacatgttaaaaaatttaaaatagtaa 40513079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6863734 - 6863684
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| ||||||||  ||||||||||||||||    
T  6863734 gtttttctatcatgtgcaaatttgcacatgttaaaaaatttaaaatagtaa 6863684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 15191050 - 15191001
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||| ||||||||||||||||| |||||||| ||| |||||| ||||||    
T  15191050 tttttttatcatgtataaatttgcacatgttaagaagtttaaagtagtaa 15191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 3398398 - 3398338
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  3398398 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 3398338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 30893805 - 30893757
Alignment:
Q  33 ttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||  ||||||| |||||||| ||| |||||||||||||    
T  30893805 ttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagtaa 30893757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 13515926 - 13515969
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaa 74  Q
    ||||||||||||||| |||||||| ||||||||  |||||||||    
T  13515926 gtttttctatcatgtgtaaatttgcacatgttaacaaatttaaa 13515969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 40980555 - 40980488
Alignment:
Q  27 aaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||||||||  ||||||| |||| |||  || |||||||||| ||  |||||||||||    
T  40980555 aaaagtttttctatcatgtgcaaatttgcacatattaaaaagtttaaaatagaaattttgtattgaaa 40980488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 9759142 - 9759192
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  9759142 gtttttctatcatgtacaaatttgcacatgttaagaaatttaaaatagtaa 9759192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 39877008 - 39876958
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  39877008 gtttttctatcatgtgtaaatttgcacatgttaagaaatttaaaatagtaa 39876958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 51691519 - 51691469
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||| |||||||| |||||||| ||||||| |||||||||    
T  51691519 gtttttctatcatgtgtaaatttgcacatgttaagaaattttaaatagtaa 51691469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 52391475 - 52391416
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||| |||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  52391475 tttttctatcatgtgtaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 52391416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 7349866 - 7349816
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||| |||||||||||||| || ||| |||||| ||||||    
T  7349866 gtttttctatcatgtgtaaatttgtacatgataagaagtttaaagtagtaa 7349816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 40049736 - 40049686
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||| ||||  ||||||| |||||||| |||||||||||||||||    
T  40049736 gtttttctattatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 40049686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 50352480 - 50352430
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||| |  ||||||| |||||||| |||||||||||||||||    
T  50352480 gtttttctatcatatgcaaatttgcacatgttaagaaatttaaaatagtaa 50352430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 18882267 - 18882327
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  18882267 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 18882327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 25840939 - 25840971
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgtta 63  Q
    |||||||||| ||||||||||||||||||||||    
T  25840939 gtttttctataatgtataaatttgtacatgtta 25840971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 32279250 - 32279198
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaa 82  Q
    ||||||| |||||||| |||||||| ||||||||  || ||||||||||||||    
T  32279250 agtttttttatcatgtgtaaatttgcacatgttaaaaagtttaaaatagtaaa 32279198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 49181250 - 49181190
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| || ||||| ||| || ||||||||||| ||||||||    
T  49181250 gtttttctatcatgtgcaaatttgcacctgttaagaagttcaaaatagtaaatttgtattg 49181190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 8736811 - 8736854
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaa 74  Q
    ||||||||||| ||| |||||||| |||||||| ||||||||||    
T  8736811 gtttttctatcgtgtgtaaatttgcacatgttaagaaatttaaa 8736854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 19468372 - 19468309
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||| ||||  ||||||| |||||||| ||| |||||||||| ||  |||||||||||    
T  19468372 gtttttctattatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattgaaa 19468309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 40682610 - 40682560
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||||  || |||| |||||||| |||||||||||||||||    
T  40682610 agtttttctatcatgtgcaa-tttgcacatgttaagaaatttaaaatagtaa 40682560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 12515463 - 12515524
Alignment:
Q  20 atatttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||  ||||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  12515463 atatttaaagggtttttctatcatgtgtaaatttgcacatgttaaaaaatttaaaatagtaa 12515524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 10307944 - 10307884
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||| ||| ||||    
T  10307944 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaaatttgcattg 10307884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 1569191 - 1569250
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||||| |||  ||||||||    
T  1569191 tttttctatcatgtataaattcgtacatgttaagaagtttaaaataataactttgtattg 1569250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 2571446 - 2571396
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  2571446 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 2571396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 40930235 - 40930182
Alignment:
Q  25 taaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    |||||||||||||||||||||  ||||||| |||||||| ||| ||||||||||    
T  40930235 taaaaagtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatag 40930182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 2566665 - 2566597
Alignment:
Q  26 aaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||| |||||||||||||||  ||||||  ||||||||  ||||||||||||||||  |||||||||||    
T  2566665 aaaaggtttttctatcatgtgcaaatttacacatgttagaaaatttaaaatagtaattttgtattgaaa 2566597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 37055367 - 37055424
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtat 89  Q
    ||||||||||||||  ||||||| |||| ||| ||| |||||||||||||| ||||||    
T  37055367 tttttctatcatgtgaaaatttgcacatattaagaagtttaaaatagtaaagttgtat 37055424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 42180229 - 42180184
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaata 77  Q
    |||||||||||||| |||||||| |||||||| ||| |||||||||    
T  42180229 tttttctatcatgtgtaaatttgcacatgttaagaagtttaaaata 42180184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 15862901 - 15862953
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaa 82  Q
    |||||||||||||||| |||||| | |||||||| | | ||||||||||||||    
T  15862901 agtttttctatcatgtgtaaattcgcacatgttaaggagtttaaaatagtaaa 15862953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 50204581 - 50204521
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  50204581 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 50204521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 41161 - 41097
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||||| |||||||||| |||||| ||| ||||||||| |||  |||||||||||    
T  41161 agtttttctatcatgtgtaaatttgtatatgttaagaagtttaaaataataattttgtattgaaa 41097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 29863302 - 29863358
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgt 87  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||||||||||||    
T  29863302 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagtaaaattgt 29863358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 14228126 - 14228176
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  14228126 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 14228176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 17552587 - 17552637
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  17552587 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 17552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 28943769 - 28943819
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  28943769 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 28943819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 8977467 - 8977526
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||| |||||||| || ||||| ||| || ||||||||||| ||||||||    
T  8977467 tttttctatcatgtgtaaatttgcacttgttaagaagttcaaaatagtaaatttgtattg 8977526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 2830681 - 2830727
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaata 77  Q
    |||||||||||||||| ||||||| |||||||| ||| |||||||||    
T  2830681 gtttttctatcatgtacaaatttgcacatgttaagaagtttaaaata 2830727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 3853121 - 3853071
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||| ||||||    
T  3853121 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaagtagtaa 3853071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 31169763 - 31169813
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||| |||||||| ||||||||  ||||||||| ||||||    
T  31169763 gtttttctatcatgtgtaaatttgcacatgttaacaaatttaaagtagtaa 31169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 27819627 - 27819672
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaat 76  Q
    |||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  27819627 gtttttctatcatgtacaaatttgcacatgttaagaagtttaaaat 27819672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 34692532 - 34692472
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattg 91  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||| ||  ||||||||    
T  34692532 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 34692472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 32614944 - 32614987
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaa 74  Q
    |||||||||||||||| ||||||| |||||||| ||| ||||||    
T  32614944 gtttttctatcatgtacaaatttgcacatgttaagaagtttaaa 32614987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 24729577 - 24729627
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  24729577 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 24729627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 38248420 - 38248470
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  38248420 gtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaa 38248470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 36731358 - 36731302
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgt 87  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||| ||||| ||||    
T  36731358 gtttttctatcatgtgtaaatttacacatgttaagaaatttaaaatggtaaatttgt 36731302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 23932744 - 23932685
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtat 89  Q
    ||||||||||||||||  ||||||| | || ||| ||| |||||||||||||||||||||    
T  23932744 agtttttctatcatgtgcaaatttgcatatattaagaagtttaaaatagtaaaattgtat 23932685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 26003348 - 26003411
Alignment:
Q  33 ttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    |||||||||||||  ||||||| |||||||| ||| |||||||||| ||  |||||||||||||    
T  26003348 ttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattgaaatt 26003411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 5583558 - 5583608
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||||   ||||||| |||||||| |||||||||||||||||    
T  5583558 gtttttctatcatgcgcaaatttgcacatgttaagaaatttaaaatagtaa 5583608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7757786 - 7757836
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||  |||||||| |||||||||||||||||    
T  7757786 gtttttctatcatgtgcaaatttacacatgttaagaaatttaaaatagtaa 7757836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 17265582 - 17265532
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| || ||||| |||||||||||||||||    
T  17265582 gtttttctatcatgtccaaatttgcacttgttaagaaatttaaaatagtaa 17265532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 29157829 - 29157879
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| ||||||| |||||||||    
T  29157829 gtttttctatcatgtgcaaatttgcacatgttaagaaattttaaatagtaa 29157879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 8065311 - 8065254
Alignment:
Q  21 tatttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatag 78  Q
    ||||||||  |||||||||||||||  ||||||| |||||||| ||| ||||||||||    
T  8065311 tatttaaagggtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatag 8065254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 34213950 - 34213999
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||| |||  ||||||| |||||||| |||||||||||||||||    
T  34213950 tttttctatcgtgtgcaaatttgcacatgttaagaaatttaaaatagtaa 34213999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 6765191 - 6765119
Alignment:
Q  18 taatatttaaaaagtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtatt 90  Q
    |||| |||||| | |||||||||||||| || ||||| |||||||| ||| ||||||| | |||| |||||||    
T  6765191 taatttttaaagaatttttctatcatgtgtagatttgcacatgttaagaagtttaaaaaaataaatttgtatt 6765119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 17234955 - 17235003
Alignment:
Q  48 aaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    ||||||| |||||||| |||||||||||||||||  |||||||| ||||    
T  17234955 aaatttgcacatgttaagaaatttaaaatagtaattttgtattggaatt 17235003  T

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Target: chr2; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 4576326 - 4576389
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    |||||||||||||||  ||||| | | |||||| |||||||||||||| ||  |||||||||||    
T  4576326 gtttttctatcatgtgcaaattcgcatatgttaagaaatttaaaatagaaattttgtattgaaa 4576389  T

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Target: chr2; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 43806538 - 43806475
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaa 94  Q
    ||||||||||| ||| |||||||| ||||||||  || |||||||||| ||  |||||||||||    
T  43806538 gtttttctatcgtgtgtaaatttgcacatgttaaaaagtttaaaatagaaattttgtattgaaa 43806475  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 182220 - 182171
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagta 80  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||| |||||    
T  182220 gtttttctatcatgtgtaaatttgtacatgttaagaagtttaaagtagta 182171  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 24526 - 24592
Alignment:
Q  30 agtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaaaattgtattgaaatt 96  Q
    ||||||||||||||||  ||||||  |||||| | |||||||||||||||||  |||||||| ||||    
T  24526 agtttttctatcatgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaatt 24592  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 13263 - 13213
Alignment:
Q  31 gtttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    |||||||||||||||  ||||||| |||||||| ||| |||||||||||||    
T  13263 gtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagtaa 13213  T

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Target: scaffold0618 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 8416 - 8464
Alignment:
Q  33 ttttctatcatgtataaatttgtacatgttatgaaatttaaaatagtaa 81  Q
    ||||||||||||| |||||||| | |||||| |||||||||| ||||||    
T  8416 ttttctatcatgtgtaaatttgcatatgttaagaaatttaaagtagtaa 8464  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 22641 - 22597
Alignment:
Q  32 tttttctatcatgtataaatttgtacatgttatgaaatttaaaat 76  Q
    ||||||||| ||||| ||||||| |||||||| ||||||||||||    
T  22641 tttttctattatgtacaaatttgcacatgttaagaaatttaaaat 22597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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