View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5837-7 (Length: 134)
Name: Solexa-NF5837-7
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5837-7 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 2e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 558454 - 558583
Alignment:
| Q |
1 |
ggtagcgccgacttatcagcatccaaggctaatatcgtatcgattaggccgagtttaagaccgactctacactaagtcgagttaataaattcaacatcca |
100 |
Q |
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| T |
558454 |
ggtagcgccgacttatcagcatccaaggctaaaatcgtatcggttaggccgagtttaagaccgactctacactaagtcgagttaataaattcaacatcca |
558553 |
T |
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| Q |
101 |
aaaagccaaccaaatcaagaagagtcagcc |
130 |
Q |
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| T |
558554 |
aaaagtcaaccaaatcatatagagtcagcc |
558583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 577722 - 577838
Alignment:
| Q |
1 |
ggtagcgccgacttatcagcatccaaggctaatatcgtatcgattaggccgagtttaagaccgactctacactaagtcgagttaataaattcaacatcca |
100 |
Q |
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| T |
577722 |
ggtagcgttgacttatgagcatccaaggctaatatcgcatcggttaggccgagtttaagaccgactctattataagttgaattaataaattcaacatcca |
577821 |
T |
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| Q |
101 |
aaaagccaaccaaatca |
117 |
Q |
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| T |
577822 |
aaaagtcaaccaaatca |
577838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 545069 - 545134
Alignment:
| Q |
69 |
acactaagtcgagttaataaattcaacatccaaaaagccaaccaaatcaagaagagtcagccaaac |
134 |
Q |
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| T |
545069 |
acactaagttgagttaataaatccaacatccaaaaagtcaagcaaatcatgtagaatcagcaaaac |
545134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 8803692 - 8803643
Alignment:
| Q |
83 |
taataaattcaacatccaaaaagccaaccaaatcaagaagagtcagccaa |
132 |
Q |
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| T |
8803692 |
taataaatccaacatccaaaaggtcaaccaaatcatgaagagtcagccaa |
8803643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 38963542 - 38963615
Alignment:
| Q |
44 |
ttaggccgagtttaagaccgactctacactaagtcgagttaataaattcaacatccaaaaagccaaccaaatca |
117 |
Q |
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| T |
38963542 |
ttaggccgaggttatgctcgactctacactcattcgagctaataactccaacatccataaagtcaaccaaatca |
38963615 |
T |
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