View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5837-9 (Length: 130)
Name: Solexa-NF5837-9
Description: NF5837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5837-9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 25908770 - 25908893
Alignment:
| Q |
7 |
agataacacctctgggtcaggagacgaaacggtaaatagacgtcataaaaagagtaaaatatactttgatagtgacagtgatgagggtgaaagaaaagaa |
106 |
Q |
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| T |
25908770 |
agataacacctctgggtcaggagacaaaacggtaaatagacgtcataaaaagagtaaaatatactttgatagtgacaatgatgagggtgaaagaaaagaa |
25908869 |
T |
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| Q |
107 |
gcttcaaggaaacaaacggaagat |
130 |
Q |
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| T |
25908870 |
gcttcaaggaaacaaacggaagat |
25908893 |
T |
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Target: chr5 (Bit Score: 82; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 40422237 - 40422132
Alignment:
| Q |
25 |
aggagacgaaacggtaaatagacgtcataaaaagagtaaaatatactttgatagtgacagtgatgagggtgaaagaaaagaagcttcaaggaaacaaacg |
124 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
40422237 |
aggagacgaaccgataaatagacgtcataaaaagagtaaaatatactttgacagtgacagtgatgagggtcaaagaaaagaagcttcaagaagacaaacg |
40422138 |
T |
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| Q |
125 |
gaagat |
130 |
Q |
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|||||| |
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| T |
40422137 |
gaagat |
40422132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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