View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-10 (Length: 127)
Name: Solexa-NF5838-10
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 53288878 - 53288759
Alignment:
| Q |
7 |
aattaggagtatttttatataagattaattaggattannnnnnnngaaaaattaactaatacatcttgatatttgaatgtgtcatataaaaggacaataa |
106 |
Q |
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| T |
53288878 |
aattaggagtatttttatataagagtaattaggattattttttt-gaaaagttaactaatacatcttgatatttgaatgtgtcatataaaaggacaataa |
53288780 |
T |
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| Q |
107 |
aattttgtataatagtattat |
127 |
Q |
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||||||||||||||||||||| |
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| T |
53288779 |
aattttgtataatagtattat |
53288759 |
T |
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