View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-11 (Length: 127)
Name: Solexa-NF5838-11
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-11 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 4e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 28725588 - 28725472
Alignment:
| Q |
7 |
acagagggggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaattttaaaattgcatacatgaaatttttgtaa |
106 |
Q |
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| T |
28725588 |
acagaagggatactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatccctacaaaattttaaaattgtgtacatgaaatttttgtaa |
28725489 |
T |
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| Q |
107 |
ggataaaaacatgtctt |
123 |
Q |
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| T |
28725488 |
ggataaaaacatgtctt |
28725472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 28710784 - 28710686
Alignment:
| Q |
15 |
ggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaattttaaaattgcatacatgaaatttttgtaaggataaaa |
114 |
Q |
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| T |
28710784 |
ggtactatacaaatattaatttttcggtacttgaaaatttaaaaattttgtctatac--------aaaattgtgtacatgaaaattttgtaaggataaaa |
28710693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 28718131 - 28718033
Alignment:
| Q |
15 |
ggtactatacaaatattaaatttttggtacttgaaaatttcaaaatttgatctctacaaaattttaaaattgcatacatgaaatttttgtaaggataaaa |
114 |
Q |
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| T |
28718131 |
ggtactatacaaatattaatttttcggtacttgaaaatttaaaaattttgtctatac--------aaaattgtgtacatgaaaattttgtaaggataaaa |
28718040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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