View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-13 (Length: 115)
Name: Solexa-NF5838-13
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-13 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 6e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 6e-50
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 31109936 - 31110043
Alignment:
| Q |
8 |
caatattggtccgtgactaccaagtaaattgaactcaagttctatatctatatctatatgtattgcaaattacaactctcaggttatataaacttatact |
107 |
Q |
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| T |
31109936 |
caatattggtccgtgactaccaagtaaattgaactcaacttctatatctatatctatatgtattgcaaattacaactctcaggttatataaacttatact |
31110035 |
T |
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| Q |
108 |
cgcagaca |
115 |
Q |
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| T |
31110036 |
tgcagaca |
31110043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 31109734 - 31109786
Alignment:
| Q |
14 |
tggtccgtgactaccaagtaaattgaactcaagttctatatctatatctatat |
66 |
Q |
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| T |
31109734 |
tggtccatgactacccagtaaattgaactcaacttttatatctatatctatat |
31109786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 31080163 - 31080218
Alignment:
| Q |
60 |
tctatatgtattgcaaattacaactctcaggttatataaacttatactcgcagaca |
115 |
Q |
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| T |
31080163 |
tctatatgtattgcaaattacaattctcaggttgtataaacttgtgcttgcagaca |
31080218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 31080123 - 31080169
Alignment:
| Q |
8 |
caatattggtccgtgactaccaagtaaattgaactcaagttctatat |
54 |
Q |
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| T |
31080123 |
caatactggtccatgaccaccaagtaaattgaactcaacttctatat |
31080169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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