View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-5 (Length: 170)
Name: Solexa-NF5838-5
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-5 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 1339037 - 1339199
Alignment:
| Q |
8 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
107 |
Q |
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| T |
1339037 |
acgaggagtagtcccgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
1339136 |
T |
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| Q |
108 |
agaatcaaacaaactatattaagaaggtattggtgagcnnnnnnnncataccggtgggagatc |
170 |
Q |
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| T |
1339137 |
agaatcaaacaaactatattaagaatgtatctgtgagcaaaaacaacataccggtgggagatc |
1339199 |
T |
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Target: scaffold0331 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2628 - 2509
Alignment:
| Q |
8 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
107 |
Q |
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| T |
2628 |
acgaggagtagtcccatagctcctttcatcatcgctatcatcattttcaacctgtttgataaaagaaaacctagtaaagaagtcgaatcaaaattttata |
2529 |
T |
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| Q |
108 |
agaatcaaacaaactatatt |
127 |
Q |
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| T |
2528 |
agaatcaaacaaactatatt |
2509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 8e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 31940873 - 31940992
Alignment:
| Q |
8 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
107 |
Q |
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| T |
31940873 |
acgaggagtagtcccatagctcctttcatcatcgctatcatcattttcaacctgtttgataaaagaaaaccgagttaagaagtggaatcaaaattttgta |
31940972 |
T |
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| Q |
108 |
agaatcaaacaaactatatt |
127 |
Q |
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| T |
31940973 |
agaatcaaacaaactatatt |
31940992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 13537423 - 13537558
Alignment:
| Q |
9 |
cgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttataa |
108 |
Q |
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| T |
13537423 |
cgaggagaagccccgtagctcctttcatcctggctctcatcatttttaatctgtttgataaaaaaaaac-aaggaaaaaaatggcatcaaaatattataa |
13537521 |
T |
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| Q |
109 |
gaatcaaacaaactatattaagaaggtattggtgagc |
145 |
Q |
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| T |
13537522 |
gaatcaaacaaactctattcataatgtatttgtgagc |
13537558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 8e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 9391210 - 9391329
Alignment:
| Q |
8 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaagaaaaccaaggaaagaaatggaatcaaaattttata |
107 |
Q |
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|||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||| | ||||||| || |||||| |||||||||||||||||| |
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| T |
9391210 |
acgaggagtagtcccatagctcctttcatcatcactatcatcattttcaacctgtttgataaacgaaaaccgagtaaagaagtggaatcaaaattttata |
9391309 |
T |
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| Q |
108 |
agaatcaaacaaactatatt |
127 |
Q |
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| T |
9391310 |
agaatcaaacaaactatatt |
9391329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 5640913 - 5641050
Alignment:
| Q |
8 |
acgaggagtagtcctgtagctcttttcatcatcgctattatcattttcaacctgtttgatagaag-aaaaccaaggaaagaaatggaatcaaaattttat |
106 |
Q |
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| T |
5640913 |
acgaggagtggtcccataactcttttcatcatcgctgtcatcattttcaacctgattgataaaagaaaaaaaaaggaaagaaatggaa-ataaatttttt |
5641011 |
T |
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| Q |
107 |
aagaatcaaacaaactatattaagaaggtattggtgagc |
145 |
Q |
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| T |
5641012 |
actaatcaaacacactatattcacaatgtatttgtgagc |
5641050 |
T |
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