View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-6 (Length: 167)
Name: Solexa-NF5838-6
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 40472711 - 40472552
Alignment:
| Q |
8 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
107 |
Q |
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| T |
40472711 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
40472612 |
T |
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| Q |
108 |
gaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
167 |
Q |
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| T |
40472611 |
gagttttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
40472552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 40466375 - 40466216
Alignment:
| Q |
8 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
107 |
Q |
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| T |
40466375 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
40466276 |
T |
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| Q |
108 |
gaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
167 |
Q |
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| T |
40466275 |
gagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
40466216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 40489357 - 40489198
Alignment:
| Q |
8 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
107 |
Q |
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| T |
40489357 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
40489258 |
T |
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| Q |
108 |
gaattttgaacaaaggatggttgaatattttgatcttgattatgaatctttgtctctctg |
167 |
Q |
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| T |
40489257 |
gagttttaaacaaaggatggttgaatattttgatcttgattacgaatctttgtctctctg |
40489198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 40480464 - 40480380
Alignment:
| Q |
30 |
aaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaagaatttt |
114 |
Q |
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| T |
40480464 |
aaaataattcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattgtcaacatcttctaaaagagtttt |
40480380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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