View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5838-8 (Length: 140)
Name: Solexa-NF5838-8
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5838-8 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 4e-45; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28725324 - 28725431
Alignment:
| Q |
1 |
atgaaccatgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaaaaaatagttacgagaaaattgagatggtctaaag |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
28725324 |
atgaaccatgttgaatggaatacccccttctcgaattgcattattgagctgggacctaagaatgaaaaaatagaaacgagaaaattgagatggtctgaag |
28725423 |
T |
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| Q |
101 |
acttgaaa |
108 |
Q |
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|||||||| |
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| T |
28725424 |
acttgaaa |
28725431 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 28710558 - 28710641
Alignment:
| Q |
9 |
tgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaaaaaatagttacgagaaaattgagatg |
92 |
Q |
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| T |
28710558 |
tgttgaatgggacacccccttctcgaattgtattcttaagctcaggcctaagaatgaaaaaacagaaacgagaaaattgagatg |
28710641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 28717905 - 28717988
Alignment:
| Q |
9 |
tgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaaaaaatagttacgagaaaattgagatg |
92 |
Q |
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| T |
28717905 |
tgttgaatgggacacccccttctcgaattgtattcttaagctcaggcctaagaatgaaaaaacagaaacgagaaaattgagatg |
28717988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28643244 - 28643293
Alignment:
| Q |
1 |
atgaaccatgttgaatggaatacccccttgtcgaattgcattattgagct |
50 |
Q |
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| T |
28643244 |
atgaaccatgttgaatgggacacccccttctcgaattgcattattaagct |
28643293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28652196 - 28652245
Alignment:
| Q |
1 |
atgaaccatgttgaatggaatacccccttgtcgaattgcattattgagct |
50 |
Q |
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| T |
28652196 |
atgaaccatgttgaatgggacacccccttctcgaattgcattattaagct |
28652245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28699515 - 28699580
Alignment:
| Q |
1 |
atgaaccatgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaa |
66 |
Q |
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| T |
28699515 |
atgaaccatgttgaatgggacacccccttctcgaattgcattcttaaggtcagacctaagaatgaa |
28699580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 28739299 - 28739356
Alignment:
| Q |
9 |
tgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaa |
66 |
Q |
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| T |
28739299 |
tgttgaacggagtacccccttctcgaattgcattattaagctcggacctaaaaatgaa |
28739356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6539 - 6457
Alignment:
| Q |
1 |
atgaaccatgttgaatggaatacccccttgtcgaattgcattattgagctgggacctaagaatgaaaaaatagttacgagaaa |
83 |
Q |
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|||||||||||||||||| | |||||||| ||||||||||||||| | || |||||||||||| |||||||| |||||||| |
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| T |
6539 |
atgaaccatgttgaatgggacacccccttctcgaattgcattattaaactcagacctaagaatggaaaaatagaaacgagaaa |
6457 |
T |
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